Variant report

Variant	rs951358
Chromosome Location	chr15:39988790-39988791
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:39980861..39985158-chr15:39988045..39992700,5	K562	blood:
2	chr15:39987378..39989028-chr15:39993423..39995543,2	K562	blood:
3	chr15:39976358..39978991-chr15:39987825..39990232,2	K562	blood:

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs1105159	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs11070231	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs11631820	0.87[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs11631824	0.87[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs11855578	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs11856448	0.81[CEU][hapmap]
rs12050804	0.86[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs12899323	0.89[ASN][1000 genomes]
rs12900583	0.89[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs12901142	0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12903514	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12911549	0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs12911999	0.90[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs1320036	0.82[EUR][1000 genomes]
rs16969637	0.81[CEU][hapmap]
rs16969640	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs172104	0.83[JPT][hapmap]
rs1906152	0.95[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs1906153	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs1906155	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1906156	0.95[CHB][hapmap];0.85[JPT][hapmap];0.94[ASN][1000 genomes]
rs1906159	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs1906160	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs1994379	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs2129459	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2254829	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2254942	0.83[EUR][1000 genomes]
rs2254947	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs2411299	0.91[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2411300	0.91[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs2411301	0.91[CHB][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs2411307	0.91[CHB][hapmap];0.84[JPT][hapmap];0.91[ASN][1000 genomes]
rs2411308	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2411309	0.90[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2411310	0.86[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs2411311	0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs2631692	0.83[EUR][1000 genomes]
rs2631693	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2631695	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2631696	0.83[EUR][1000 genomes]
rs2631697	0.95[CHB][hapmap];0.84[JPT][hapmap];0.93[ASN][1000 genomes]
rs2631698	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2631700	0.81[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2631701	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2631702	0.95[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs2631703	0.82[EUR][1000 genomes]
rs2631704	0.94[ASN][1000 genomes]
rs2631705	0.95[CHB][hapmap];0.84[JPT][hapmap];0.94[ASN][1000 genomes]
rs2631709	0.81[CEU][hapmap]
rs2631710	0.87[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs2631715	0.80[EUR][1000 genomes]
rs2664124	0.81[CEU][hapmap]
rs2664125	0.92[ASN][1000 genomes]
rs2664127	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2664130	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2664131	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2664133	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2664135	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs28437905	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs28581473	0.85[ASN][1000 genomes]
rs2898685	0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs3103065	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs3103066	0.83[EUR][1000 genomes]
rs4319738	0.86[ASN][1000 genomes]
rs4429263	0.91[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs4476148	0.92[ASN][1000 genomes]
rs4480779	0.87[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs4493017	0.86[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs4505280	0.87[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes]
rs4572354	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4591113	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs4606692	0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs4924376	0.90[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs4924377	0.91[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs56197892	0.81[EUR][1000 genomes]
rs62004771	0.82[EUR][1000 genomes]
rs62004772	0.83[EUR][1000 genomes]
rs6492909	0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6492910	0.87[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs6492911	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs67426899	0.82[EUR][1000 genomes]
rs68183224	0.94[ASN][1000 genomes]
rs7165067	0.86[CHB][hapmap]
rs7167100	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7177857	0.93[ASN][1000 genomes]
rs7179013	0.91[CHB][hapmap]
rs8033902	0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8034543	0.86[ASN][1000 genomes]
rs8034885	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8035354	0.85[ASN][1000 genomes]
rs8036226	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8042068	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs937960	0.91[CHB][hapmap];0.84[JPT][hapmap];0.92[ASN][1000 genomes]
rs9672572	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39977200-39990600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:39983000-39989800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:39983200-39990800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:39985600-39989400	Weak transcription	Fetal Muscle Leg	muscle
5	chr15:39985600-39996600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:39985800-39988800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr15:39985800-39992000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:39985800-39992200	Weak transcription	Fetal Lung	lung
9	chr15:39985800-39996400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:39985800-39996600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:39986200-39988800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:39986800-39988800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr15:39988000-39996600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:39988200-39990800	Weak transcription	Fetal Intestine Large	intestine
15	chr15:39988400-39988800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:39988400-39989600	Weak transcription	K562	blood

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