Variant report

Variant	rs56197892
Chromosome Location	chr15:39997996-39997997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39992003..39993969-chr15:39997457..39999112,2	K562	blood:
2	chr15:39979875..39982287-chr15:39997012..39999485,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11855578	0.96[EUR][1000 genomes]
rs11856448	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1320036	0.96[EUR][1000 genomes]
rs16969637	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16969640	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17714733	0.80[EUR][1000 genomes]
rs1906153	0.98[EUR][1000 genomes]
rs1906159	0.98[EUR][1000 genomes]
rs1906160	0.96[EUR][1000 genomes]
rs2008623	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2087132	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2129458	0.80[EUR][1000 genomes]
rs2254829	0.98[EUR][1000 genomes]
rs2254942	0.98[EUR][1000 genomes]
rs2254947	0.96[EUR][1000 genomes]
rs2412424	0.80[EUR][1000 genomes]
rs2631692	0.98[EUR][1000 genomes]
rs2631693	0.98[EUR][1000 genomes]
rs2631695	0.98[EUR][1000 genomes]
rs2631696	0.98[EUR][1000 genomes]
rs2631698	0.98[EUR][1000 genomes]
rs2631703	0.96[EUR][1000 genomes]
rs2631708	0.80[EUR][1000 genomes]
rs2631709	0.80[EUR][1000 genomes]
rs2631712	0.80[EUR][1000 genomes]
rs2631715	0.88[EUR][1000 genomes]
rs2664124	0.80[EUR][1000 genomes]
rs2664127	0.98[EUR][1000 genomes]
rs2664130	0.98[EUR][1000 genomes]
rs2664131	0.98[EUR][1000 genomes]
rs3103066	0.98[EUR][1000 genomes]
rs62004766	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62004768	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62004771	0.96[EUR][1000 genomes]
rs62004772	0.98[EUR][1000 genomes]
rs67426899	0.96[EUR][1000 genomes]
rs8028503	0.91[EUR][1000 genomes]
rs8035895	0.80[EUR][1000 genomes]
rs951358	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39994200-39999400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:39994200-39999600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:39997000-40001800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr15:39997400-39998400	Weak transcription	K562	blood
5	chr15:39997400-40000800	Weak transcription	NHDF-Ad	bronchial
6	chr15:39997600-39999000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:39997600-40000800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:39997600-40002400	Weak transcription	Osteobl	bone

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