Variant report

Variant	rs1105159
Chromosome Location	chr15:40005095-40005096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40004259..40006236-chr15:40010388..40013115,2	MCF-7	breast:
2	chr15:39984467..39987996-chr15:40003626..40006912,3	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11070231	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs11631820	0.91[CHB][hapmap]
rs11631824	0.91[CHB][hapmap]
rs12050804	0.91[CHB][hapmap]
rs12900583	0.94[CHB][hapmap]
rs12901142	0.86[CHB][hapmap]
rs12911549	0.90[CHB][hapmap]
rs12911999	0.95[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1906152	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1906155	0.84[ASN][1000 genomes]
rs1906156	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1994379	0.95[CHB][hapmap];0.85[CHD][hapmap];0.89[ASN][1000 genomes]
rs2129459	0.83[ASN][1000 genomes]
rs2411299	0.86[CHB][hapmap]
rs2411300	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs2411301	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs2411307	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs2411309	0.84[CHB][hapmap]
rs2411310	0.91[CHB][hapmap]
rs2411311	0.86[CHB][hapmap]
rs2631697	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs2631700	0.90[CHB][hapmap];0.82[ASN][1000 genomes]
rs2631701	0.94[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs2631702	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2631704	0.87[ASN][1000 genomes]
rs2631705	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs2631710	0.91[CHB][hapmap];0.87[ASN][1000 genomes]
rs2664125	0.86[ASN][1000 genomes]
rs2664133	0.83[ASN][1000 genomes]
rs2664135	0.95[CHB][hapmap];0.81[CHD][hapmap];0.83[ASN][1000 genomes]
rs28581473	0.80[ASN][1000 genomes]
rs2898685	0.86[CHB][hapmap]
rs3103065	1.00[CHB][hapmap]
rs4429263	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs4476148	0.85[ASN][1000 genomes]
rs4480779	0.91[CHB][hapmap]
rs4493017	0.91[CHB][hapmap]
rs4505280	0.91[CHB][hapmap]
rs4572354	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs4591113	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs4606692	0.86[CHB][hapmap]
rs4924376	0.95[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs4924377	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs6492909	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs6492910	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs6492911	0.91[CHB][hapmap]
rs68183224	0.83[ASN][1000 genomes]
rs7165067	0.81[CHB][hapmap]
rs7177857	0.84[ASN][1000 genomes]
rs7179013	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8033902	0.86[CHB][hapmap]
rs937960	0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs951358	0.95[CHB][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv832978	chr15:39899759-40094881	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1105159	C15orf54	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40000200-40005400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:40001200-40011800	Weak transcription	NHDF-Ad	bronchial
3	chr15:40003600-40011200	Weak transcription	Osteobl	bone
4	chr15:40004800-40007000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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