Variant report

Variant	rs2412434
Chromosome Location	chr11:4792685-4792686
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:4789513-4794705..11:5380014-5384338	H1-hESC	embryonic stem cell:	embryo
2	11:4789513-4794705..11:4988858-5002113	Hela-S3	cervix:
3	11:4789513-4794705..11:5033143-5038367	K562	blood:

Variant related genes	Relation type
ENSG00000224300	Chromatin interaction
ENSG00000236248	Chromatin interaction
ENSG00000225003	Chromatin interaction

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1030722	0.98[EUR][1000 genomes]
rs11822216	0.81[EUR][1000 genomes]
rs12785245	0.97[EUR][1000 genomes]
rs12788102	0.98[EUR][1000 genomes]
rs12789215	0.98[EUR][1000 genomes]
rs12789492	0.98[EUR][1000 genomes]
rs12791402	0.98[EUR][1000 genomes]
rs12792898	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12794880	0.98[EUR][1000 genomes]
rs12795212	0.95[EUR][1000 genomes]
rs12795377	0.98[EUR][1000 genomes]
rs12797008	0.98[EUR][1000 genomes]
rs12797269	0.98[EUR][1000 genomes]
rs12801309	0.98[EUR][1000 genomes]
rs12801339	0.98[EUR][1000 genomes]
rs12801465	0.83[EUR][1000 genomes]
rs12801757	0.98[EUR][1000 genomes]
rs12802561	0.98[EUR][1000 genomes]
rs12802647	0.95[EUR][1000 genomes]
rs12804065	0.97[EUR][1000 genomes]
rs12806476	0.98[EUR][1000 genomes]
rs12808215	0.98[EUR][1000 genomes]
rs1433913	0.98[EUR][1000 genomes]
rs1594811	0.98[EUR][1000 genomes]
rs1594812	0.98[EUR][1000 genomes]
rs1594813	0.98[EUR][1000 genomes]
rs1594814	0.98[EUR][1000 genomes]
rs17227393	0.98[EUR][1000 genomes]
rs17227456	0.98[EUR][1000 genomes]
rs17227484	0.98[EUR][1000 genomes]
rs17227547	0.98[EUR][1000 genomes]
rs17227809	0.98[EUR][1000 genomes]
rs17227978	0.98[EUR][1000 genomes]
rs17228092	0.98[EUR][1000 genomes]
rs17228176	0.94[EUR][1000 genomes]
rs17228183	0.95[EUR][1000 genomes]
rs17228218	0.95[EUR][1000 genomes]
rs17247598	0.95[EUR][1000 genomes]
rs17324609	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17325330	0.98[EUR][1000 genomes]
rs17325477	0.98[EUR][1000 genomes]
rs17325567	0.98[EUR][1000 genomes]
rs17328565	0.82[EUR][1000 genomes]
rs1897739	0.93[EUR][1000 genomes]
rs2164014	0.98[EUR][1000 genomes]
rs2412433	0.98[EUR][1000 genomes]
rs2898964	0.98[EUR][1000 genomes]
rs2898965	0.98[EUR][1000 genomes]
rs34009241	0.95[EUR][1000 genomes]
rs34012768	0.98[EUR][1000 genomes]
rs34024161	0.96[EUR][1000 genomes]
rs34104979	0.98[EUR][1000 genomes]
rs34170551	0.98[EUR][1000 genomes]
rs34231378	0.98[EUR][1000 genomes]
rs34233903	0.98[EUR][1000 genomes]
rs34234149	0.98[EUR][1000 genomes]
rs34238074	0.98[EUR][1000 genomes]
rs34238923	0.98[EUR][1000 genomes]
rs34245878	0.97[EUR][1000 genomes]
rs34296834	0.98[EUR][1000 genomes]
rs34352527	0.97[EUR][1000 genomes]
rs34367456	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34386616	0.98[EUR][1000 genomes]
rs34471580	0.98[EUR][1000 genomes]
rs34605374	0.98[EUR][1000 genomes]
rs34740482	0.95[EUR][1000 genomes]
rs34758607	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34774719	0.95[EUR][1000 genomes]
rs34775015	0.98[EUR][1000 genomes]
rs34798636	0.98[EUR][1000 genomes]
rs34885098	0.98[EUR][1000 genomes]
rs34971311	0.98[EUR][1000 genomes]
rs35045960	0.98[EUR][1000 genomes]
rs35265535	0.98[EUR][1000 genomes]
rs35324703	0.98[EUR][1000 genomes]
rs35632863	0.98[EUR][1000 genomes]
rs35838746	0.98[EUR][1000 genomes]
rs35902686	0.98[EUR][1000 genomes]
rs35956756	0.98[EUR][1000 genomes]
rs36009426	0.98[EUR][1000 genomes]
rs36060165	0.83[EUR][1000 genomes]
rs36093088	0.98[EUR][1000 genomes]
rs4910672	0.97[EUR][1000 genomes]
rs4910673	0.98[EUR][1000 genomes]
rs4910677	0.98[EUR][1000 genomes]
rs4910679	0.98[EUR][1000 genomes]
rs58754867	0.96[EUR][1000 genomes]
rs60113282	0.98[EUR][1000 genomes]
rs60249619	0.95[EUR][1000 genomes]
rs60548866	0.98[EUR][1000 genomes]
rs60617306	0.98[EUR][1000 genomes]
rs66473029	0.98[EUR][1000 genomes]
rs66519116	0.98[EUR][1000 genomes]
rs66751800	0.98[EUR][1000 genomes]
rs67119549	0.98[EUR][1000 genomes]
rs67176708	0.98[EUR][1000 genomes]
rs67885020	0.97[EUR][1000 genomes]
rs68127593	0.98[EUR][1000 genomes]
rs71480714	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71480715	0.97[EUR][1000 genomes]
rs71480716	0.98[EUR][1000 genomes]
rs71480717	0.98[EUR][1000 genomes]
rs71480718	0.98[EUR][1000 genomes]
rs71480719	0.98[EUR][1000 genomes]
rs71480720	0.98[EUR][1000 genomes]
rs73399018	0.98[EUR][1000 genomes]
rs73399021	0.97[EUR][1000 genomes]
rs73399027	0.98[EUR][1000 genomes]
rs73399028	0.98[EUR][1000 genomes]
rs73399030	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043803	chr11:4388448-4837042	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv540916	chr11:4388448-4837042	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv1048224	chr11:4390227-4920324	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
4	nsv540917	chr11:4390227-4920324	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
5	nsv896911	chr11:4400801-4806872	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
6	esv3424302	chr11:4585155-4880050	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
7	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
8	nsv896915	chr11:4659419-4844393	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv832056	chr11:4673001-4824890	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv896916	chr11:4712353-4806872	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	nsv1038862	chr11:4758179-4807364	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	esv1806557	chr11:4778433-4820481	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	esv1809118	chr11:4782207-4843426	Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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