Variant report

Variant	rs2413938
Chromosome Location	chr15:49501997-49501998
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:49461608..49464050-chr15:49500977..49504121,3	K562	blood:
2	chr15:49498210..49500697-chr15:49501060..49503972,2	K562	blood:

Variant related genes	Relation type
ENSG00000156958	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12900001	0.83[AMR][1000 genomes]
rs16962243	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs577659	0.85[EUR][1000 genomes]
rs72727251	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7496529	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49463200-49508200	Weak transcription	Ovary	ovary
2	chr15:49463600-49517600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:49463600-49527800	Weak transcription	HSMM	muscle
4	chr15:49463600-49540200	Weak transcription	Colonic Mucosa	Colon
5	chr15:49465400-49508200	Weak transcription	Hela-S3	cervix
6	chr15:49480000-49510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:49480200-49502000	Weak transcription	Aorta	Aorta
8	chr15:49480200-49503800	Weak transcription	Esophagus	oesophagus
9	chr15:49480600-49503800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:49484200-49519400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:49487000-49510600	Weak transcription	Thymus	Thymus
12	chr15:49487200-49531200	Weak transcription	HMEC	breast
13	chr15:49489200-49508000	Weak transcription	Gastric	stomach
14	chr15:49489400-49508200	Weak transcription	Pancreas	Pancrea
15	chr15:49490800-49508400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr15:49491400-49510600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:49492000-49517600	Weak transcription	NHLF	lung
18	chr15:49492000-49520000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr15:49492000-49527800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr15:49492000-49530200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr15:49492000-49539400	Weak transcription	Small Intestine	intestine
22	chr15:49492200-49512800	Weak transcription	NHDF-Ad	bronchial
23	chr15:49492600-49503800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:49492800-49514600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr15:49493000-49503800	Weak transcription	Brain Hippocampus Middle	brain
26	chr15:49493000-49520000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr15:49494000-49518600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr15:49494400-49506000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:49495000-49503000	Weak transcription	Fetal Thymus	thymus
30	chr15:49495000-49509400	Weak transcription	K562	blood
31	chr15:49495000-49510600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr15:49495000-49515600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr15:49495000-49515800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr15:49495000-49518000	Weak transcription	Placenta	Placenta
35	chr15:49495200-49520200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr15:49495400-49510400	Weak transcription	Osteobl	bone
37	chr15:49496000-49512400	Weak transcription	HUVEC	blood vessel
38	chr15:49496200-49510600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr15:49496400-49502800	Weak transcription	Fetal Stomach	stomach
40	chr15:49496400-49508200	Weak transcription	Left Ventricle	heart
41	chr15:49496600-49502800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr15:49499200-49509000	Weak transcription	Dnd41	blood
43	chr15:49499600-49503400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr15:49500200-49502200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
45	chr15:49500600-49502400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr15:49500600-49503400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:49500600-49508400	Weak transcription	Stomach Mucosa	stomach
48	chr15:49500800-49502000	ZNF genes & repeats	Primary T cells from cord blood	blood
49	chr15:49501000-49508200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr15:49501600-49508000	Weak transcription	Fetal Heart	heart

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