Variant report

Variant	rs7496529
Chromosome Location	chr15:49550051-49550052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12442701	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16962243	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2413938	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs577659	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs72727251	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039220	chr15:49492509-49644261	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv569365	chr15:49545009-49557933	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv569375	chr15:49545192-49557933	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49518600-49557600	Weak transcription	Esophagus	oesophagus
2	chr15:49520400-49595600	Weak transcription	Right Ventricle	heart
3	chr15:49522400-49559400	Weak transcription	Pancreas	Pancrea
4	chr15:49528000-49576000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:49529200-49550600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr15:49533800-49576200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr15:49535600-49557000	Weak transcription	Fetal Intestine Small	intestine
8	chr15:49535600-49564600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr15:49535600-49574200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr15:49535600-49574200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:49535800-49563400	Weak transcription	NH-A	brain
12	chr15:49535800-49566800	Weak transcription	Left Ventricle	heart
13	chr15:49535800-49575800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr15:49536200-49553200	Weak transcription	Primary B cells from cord blood	blood
15	chr15:49537600-49566000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:49538600-49550400	Weak transcription	HSMM	muscle
17	chr15:49539400-49553200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:49539600-49563000	Weak transcription	Ovary	ovary
19	chr15:49540000-49550400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr15:49540000-49550400	Weak transcription	NHDF-Ad	bronchial
21	chr15:49540000-49552200	Weak transcription	Fetal Muscle Leg	muscle
22	chr15:49540000-49566200	Weak transcription	K562	blood
23	chr15:49540000-49577600	Weak transcription	Small Intestine	intestine
24	chr15:49540200-49552200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:49540600-49557400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:49541400-49551400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:49541400-49562600	Weak transcription	Dnd41	blood
28	chr15:49541600-49557200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr15:49541600-49575000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr15:49541600-49595800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr15:49541800-49558800	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr15:49542000-49560800	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr15:49542200-49557200	Weak transcription	Primary hematopoietic stem cells	blood
34	chr15:49542400-49550600	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr15:49542800-49560800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:49543000-49550600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:49543200-49550200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr15:49543200-49558000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr15:49543800-49564600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr15:49543800-49574200	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr15:49546000-49550800	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr15:49546400-49550400	Weak transcription	Primary T cells from cord blood	blood
43	chr15:49546400-49557200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr15:49548400-49550400	Weak transcription	Osteobl	bone
45	chr15:49548400-49562200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr15:49548600-49550400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:49548600-49553200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:49548800-49575800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr15:49549400-49550400	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr15:49549400-49575200	Weak transcription	Hela-S3	cervix

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