The 2.0 version of rSNPBase

Variant report

Variant rs2413940
Chromosome Location chr15:49520187-49520188
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:85 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:49463600-49527800 Weak transcription HSMM muscle
2 chr15:49463600-49540200 Weak transcription Colonic Mucosa Colon
3 chr15:49487200-49531200 Weak transcription HMEC breast
4 chr15:49492000-49527800 Weak transcription Rectal Smooth Muscle rectum
5 chr15:49492000-49530200 Weak transcription Stomach Smooth Muscle stomach
6 chr15:49492000-49539400 Weak transcription Small Intestine intestine
7 chr15:49495200-49520200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr15:49503600-49524000 Weak transcription HepG2 liver
9 chr15:49504200-49520200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr15:49504200-49530800 Weak transcription Fetal Thymus thymus
11 chr15:49508800-49521600 Weak transcription Hela-S3 cervix
12 chr15:49508800-49535800 Weak transcription A549 lung
13 chr15:49509400-49527400 Weak transcription Brain Cingulate Gyrus brain
14 chr15:49510000-49541800 Weak transcription NHEK skin
15 chr15:49510200-49524600 Weak transcription Primary neutrophils fromperipheralblood blood
16 chr15:49510200-49537000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
17 chr15:49510800-49534400 Weak transcription Muscle Satellite Cultured Cells --
18 chr15:49511000-49527600 Weak transcription Dnd41 blood
19 chr15:49511200-49527400 Weak transcription Osteobl bone
20 chr15:49511400-49530600 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr15:49511600-49523400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
22 chr15:49511800-49531400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr15:49511800-49532200 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr15:49513200-49527200 Weak transcription NHDF-Ad bronchial
25 chr15:49516000-49527400 Weak transcription Brain Hippocampus Middle brain
26 chr15:49516000-49531400 Weak transcription Primary T killer memory cells from peripheral blood blood
27 chr15:49516200-49521400 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr15:49516200-49527600 Weak transcription Colon Smooth Muscle Colon
29 chr15:49517600-49521400 Weak transcription Gastric stomach
30 chr15:49517800-49521800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr15:49517800-49521800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
32 chr15:49518000-49535400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr15:49518000-49541000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr15:49518200-49520200 Weak transcription Primary B cells from cord blood blood
35 chr15:49518200-49521000 Weak transcription Primary monocytes fromperipheralblood blood
36 chr15:49518200-49521400 Weak transcription Thymus Thymus
37 chr15:49518200-49548600 Weak transcription Aorta Aorta
38 chr15:49518400-49520200 Weak transcription Fetal Intestine Small intestine
39 chr15:49518400-49521400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
40 chr15:49518400-49521400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
41 chr15:49518400-49521600 Weak transcription Pancreas Pancrea
42 chr15:49518400-49521600 Weak transcription Spleen Spleen
43 chr15:49518400-49523200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr15:49518400-49523200 Weak transcription Placenta Placenta
45 chr15:49518400-49523800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
46 chr15:49518400-49524000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
47 chr15:49518400-49524200 Weak transcription Liver Liver
48 chr15:49518400-49524400 Weak transcription H9 Cell Line embryonic stem cell
49 chr15:49518400-49527600 Weak transcription NHLF lung
50 chr15:49518600-49520200 Weak transcription Primary mononuclear cells fromperipheralblood Blood

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Last update: Aug 31, 2015