Variant report

Variant	rs74012344
Chromosome Location	chr15:49698626-49698627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16962159	1.00[AMR][1000 genomes]
rs16962194	1.00[AMR][1000 genomes]
rs16962260	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16962301	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16962445	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16962457	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16962483	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2413940	1.00[AMR][1000 genomes]
rs58357997	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012342	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012376	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012377	1.00[AMR][1000 genomes]
rs74012379	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012381	1.00[AMR][1000 genomes]
rs74012382	1.00[AMR][1000 genomes]
rs74012383	1.00[AMR][1000 genomes]
rs74012386	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012388	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74012389	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039368	chr15:49566094-49764066	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv833002	chr15:49621400-49781799	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:49698400-49699200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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