Variant report

Variant	rs2414037
Chromosome Location	chr15:50496570-50496571
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:50496465-50496625	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
SLC27A2	TF binding region

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11854761	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11854881	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11858160	0.80[AMR][1000 genomes]
rs16963441	0.80[AMR][1000 genomes]
rs17415862	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34490804	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3803371	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55740521	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55852503	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55970302	0.80[AMR][1000 genomes]
rs56083537	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56306192	0.80[AMR][1000 genomes]
rs57335604	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs58277329	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59690694	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60383354	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60387657	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66472276	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7182866	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72737020	0.80[AMR][1000 genomes]
rs72737028	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72737033	0.83[AMR][1000 genomes]
rs72737034	0.83[AMR][1000 genomes]
rs72737035	0.83[AMR][1000 genomes]
rs72737040	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72737046	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72737047	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72737057	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72737059	0.83[AMR][1000 genomes]
rs73395114	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9672196	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50476000-50503400	Weak transcription	Colonic Mucosa	Colon
2	chr15:50476600-50498000	Weak transcription	Pancreas	Pancrea
3	chr15:50477600-50498000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:50477600-50502200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr15:50478400-50502400	Weak transcription	Placenta	Placenta
6	chr15:50480400-50501600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:50482000-50502800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr15:50482600-50501800	Weak transcription	A549	lung
9	chr15:50483200-50497400	Weak transcription	K562	blood
10	chr15:50486800-50498000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr15:50488800-50499000	Weak transcription	Small Intestine	intestine
12	chr15:50489400-50502200	Strong transcription	Hela-S3	cervix
13	chr15:50489600-50497400	Strong transcription	Liver	Liver
14	chr15:50490000-50500800	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr15:50490000-50501800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr15:50492600-50503000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr15:50494000-50502000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:50494400-50496800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:50494600-50502000	Strong transcription	Fetal Intestine Large	intestine
20	chr15:50495000-50497400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:50496000-50497000	Strong transcription	Fetal Intestine Small	intestine
22	chr15:50496000-50498800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr15:50496400-50497200	Weak transcription	HepG2	liver

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