Variant report

Variant	rs72737047
Chromosome Location	chr15:50478126-50478127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:50471286..50473926-chr15:50475708..50479311,4	K562	blood:
2	chr15:50472301..50476594-chr15:50477538..50481555,4	K562	blood:
3	chr15:50475880..50478806-chr15:50494358..50497931,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104043	Chromatin interaction
ENSG00000140284	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11070756	0.85[ASN][1000 genomes]
rs11070757	0.85[ASN][1000 genomes]
rs11854761	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854881	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858160	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12440837	0.81[ASN][1000 genomes]
rs12906623	0.81[ASN][1000 genomes]
rs12912519	0.81[ASN][1000 genomes]
rs16963441	0.83[AMR][1000 genomes]
rs17415862	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17499726	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2414037	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34490804	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3803371	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55740521	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55852503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55853214	0.89[ASN][1000 genomes]
rs55970302	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56083537	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56306192	0.83[AMR][1000 genomes]
rs57335604	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58277329	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59690694	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60383354	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60387657	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66472276	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7182866	0.83[AMR][1000 genomes]
rs72737014	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72737020	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72737025	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72737026	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72737028	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72737030	0.85[ASN][1000 genomes]
rs72737033	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72737034	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72737035	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72737040	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72737046	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737057	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73395114	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8033014	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8036098	0.81[ASN][1000 genomes]
rs9672196	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904209	chr15:50444824-50482133	Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50476000-50503400	Weak transcription	Colonic Mucosa	Colon
2	chr15:50476200-50478200	Enhancers	Fetal Intestine Small	intestine
3	chr15:50476200-50479000	Weak transcription	K562	blood
4	chr15:50476200-50481400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:50476600-50498000	Weak transcription	Pancreas	Pancrea
6	chr15:50477400-50481400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr15:50477600-50478800	Weak transcription	Fetal Intestine Large	intestine
8	chr15:50477600-50479000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr15:50477600-50481400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:50477600-50481800	Weak transcription	A549	lung
11	chr15:50477600-50486200	Enhancers	HepG2	liver
12	chr15:50477600-50498000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr15:50477600-50502200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr15:50477800-50478200	Active TSS	Liver	Liver
15	chr15:50477800-50478200	Weak transcription	Placenta	Placenta
16	chr15:50477800-50478400	Weak transcription	Hela-S3	cervix
17	chr15:50477800-50479400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr15:50477800-50479600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr15:50477800-50480200	Weak transcription	Adipose Nuclei	Adipose
20	chr15:50478000-50486400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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