Variant report

Variant	rs12906623
Chromosome Location	chr15:50433084-50433085
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50430804..50433194-chr15:50550057..50552269,2	MCF-7	breast:
2	chr15:50431663..50433550-chr15:50434426..50437064,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10519261	0.89[AFR][1000 genomes]
rs11070756	0.96[ASN][1000 genomes]
rs11070757	0.96[ASN][1000 genomes]
rs11854761	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11854881	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11858160	0.96[ASN][1000 genomes]
rs12440837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12899687	0.89[AFR][1000 genomes]
rs12912492	0.89[AFR][1000 genomes]
rs12912519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17415291	1.00[ASW][hapmap];0.85[GIH][hapmap];0.87[LWK][hapmap];0.89[AFR][1000 genomes]
rs17415452	0.84[AFR][1000 genomes]
rs17415862	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17499601	0.89[AFR][1000 genomes]
rs17499691	0.89[AFR][1000 genomes]
rs17499726	0.96[ASN][1000 genomes]
rs17499837	0.89[AFR][1000 genomes]
rs34398655	0.89[AFR][1000 genomes]
rs34490804	0.81[ASN][1000 genomes]
rs35007117	0.89[AFR][1000 genomes]
rs3803371	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs55852503	0.81[ASN][1000 genomes]
rs55853214	0.85[ASN][1000 genomes]
rs55970302	0.96[ASN][1000 genomes]
rs56307748	0.88[ASN][1000 genomes]
rs57335604	0.96[ASN][1000 genomes]
rs58277329	0.88[ASN][1000 genomes]
rs59690694	0.81[ASN][1000 genomes]
rs60383354	0.88[ASN][1000 genomes]
rs60387657	0.96[ASN][1000 genomes]
rs62023189	0.89[AFR][1000 genomes]
rs7163792	0.81[AFR][1000 genomes]
rs72737004	0.88[ASN][1000 genomes]
rs72737014	0.96[ASN][1000 genomes]
rs72737020	0.96[ASN][1000 genomes]
rs72737025	0.96[ASN][1000 genomes]
rs72737026	0.96[ASN][1000 genomes]
rs72737028	0.96[ASN][1000 genomes]
rs72737030	0.96[ASN][1000 genomes]
rs72737033	0.96[ASN][1000 genomes]
rs72737034	0.96[ASN][1000 genomes]
rs72737035	0.96[ASN][1000 genomes]
rs72737040	0.88[ASN][1000 genomes]
rs72737046	0.81[ASN][1000 genomes]
rs72737047	0.81[ASN][1000 genomes]
rs8033014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs8036098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv569395	chr15:50345393-50437494	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv904208	chr15:50428495-50457858	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50427800-50436400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:50429000-50434200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr15:50429000-50437000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr15:50429000-50437600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr15:50429600-50434600	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:50430200-50433600	Enhancers	Hela-S3	cervix
7	chr15:50430400-50436800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:50430400-50436800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:50430600-50437000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:50430600-50442600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:50430800-50434400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr15:50430800-50435400	Weak transcription	NHDF-Ad	bronchial
13	chr15:50430800-50437000	Weak transcription	Osteobl	bone
14	chr15:50432200-50435000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr15:50432600-50434600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:50433000-50433800	Enhancers	HUVEC	blood vessel
17	chr15:50433000-50434400	Enhancers	Primary hematopoietic stem cells	blood

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