Variant report

Variant	rs11070757
Chromosome Location	chr15:50443380-50443381
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:50442015..50445819-chr15:50646242..50648814,3	MCF-7	breast:
2	chr15:50441826..50443865-chr15:50447312..50448895,2	MCF-7	breast:
3	chr15:50437707..50440587-chr15:50443318..50445441,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000244879	Chromatin interaction
ENSG00000104064	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11070756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11854761	0.85[ASN][1000 genomes]
rs11854881	0.85[ASN][1000 genomes]
rs11858160	1.00[ASN][1000 genomes]
rs12440837	0.96[ASN][1000 genomes]
rs12906623	0.96[ASN][1000 genomes]
rs12912519	0.96[ASN][1000 genomes]
rs17415862	0.85[ASN][1000 genomes]
rs17499726	1.00[ASN][1000 genomes]
rs34490804	0.85[ASN][1000 genomes]
rs3803371	0.85[ASN][1000 genomes]
rs55852503	0.85[ASN][1000 genomes]
rs55853214	0.88[ASN][1000 genomes]
rs55970302	1.00[ASN][1000 genomes]
rs56083537	0.81[ASN][1000 genomes]
rs56307748	0.92[ASN][1000 genomes]
rs57335604	1.00[ASN][1000 genomes]
rs58277329	0.92[ASN][1000 genomes]
rs59690694	0.85[ASN][1000 genomes]
rs60383354	0.92[ASN][1000 genomes]
rs60387657	1.00[ASN][1000 genomes]
rs72737004	0.92[ASN][1000 genomes]
rs72737014	1.00[ASN][1000 genomes]
rs72737020	1.00[ASN][1000 genomes]
rs72737025	1.00[ASN][1000 genomes]
rs72737026	1.00[ASN][1000 genomes]
rs72737028	1.00[ASN][1000 genomes]
rs72737030	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737033	1.00[ASN][1000 genomes]
rs72737034	1.00[ASN][1000 genomes]
rs72737035	1.00[ASN][1000 genomes]
rs72737040	0.92[ASN][1000 genomes]
rs72737046	0.85[ASN][1000 genomes]
rs72737047	0.85[ASN][1000 genomes]
rs8033014	1.00[ASN][1000 genomes]
rs8036098	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904208	chr15:50428495-50457858	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50441800-50448600	Weak transcription	A549	lung
2	chr15:50442600-50443400	Enhancers	GM12878-XiMat	blood
3	chr15:50442600-50443400	Enhancers	K562	blood
4	chr15:50442600-50443800	Enhancers	Hela-S3	cervix
5	chr15:50443200-50443400	Enhancers	HMEC	breast

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