Variant report

Variant	rs72737025
Chromosome Location	chr15:50438272-50438273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:50437465..50438280-chr15:50607926..50608913,5	MCF-7	breast:
2	chr15:50437707..50440587-chr15:50443318..50445441,2	MCF-7	breast:
3	chr15:50433897..50436991-chr15:50437166..50439975,3	MCF-7	breast:
4	chr15:50436327..50442259-chr15:50645496..50648593,7	MCF-7	breast:
5	chr15:50436281..50440300-chr15:50607004..50610746,4	MCF-7	breast:
6	chr15:50435789..50439310-chr15:50472898..50476135,3	MCF-7	breast:
7	chr15:50428036..50430534-chr15:50437642..50439457,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104064	Chromatin interaction
ENSG00000244879	Chromatin interaction
ENSG00000104043	Chromatin interaction
ENSG00000140284	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11070756	1.00[ASN][1000 genomes]
rs11070757	1.00[ASN][1000 genomes]
rs11854761	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11854881	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11858160	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12440837	0.96[ASN][1000 genomes]
rs12906623	0.96[ASN][1000 genomes]
rs12912519	0.96[ASN][1000 genomes]
rs17415862	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17499726	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34490804	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3803371	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55740521	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55852503	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55853214	0.88[ASN][1000 genomes]
rs55970302	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56083537	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56307748	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57335604	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58277329	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59690694	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60383354	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60387657	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66472276	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72737004	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72737014	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737020	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737028	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737030	1.00[ASN][1000 genomes]
rs72737033	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737034	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737035	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737040	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72737046	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72737047	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72737057	0.80[AMR][1000 genomes]
rs73395114	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8033014	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8036098	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1035983	chr15:50223334-50595170	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv542382	chr15:50223334-50595170	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv904208	chr15:50428495-50457858	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50430600-50442600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:50434400-50438800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr15:50434600-50439400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:50436800-50439200	Enhancers	Hela-S3	cervix
5	chr15:50437000-50438800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr15:50437000-50439400	Enhancers	A549	lung
7	chr15:50437400-50439400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:50437600-50439000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:50437600-50439400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr15:50437800-50438800	Enhancers	Liver	Liver
11	chr15:50437800-50441200	Weak transcription	HMEC	breast
12	chr15:50437800-50441200	Weak transcription	NHEK	skin
13	chr15:50438000-50438800	Weak transcription	NHDF-Ad	bronchial
14	chr15:50438000-50439000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr15:50438000-50439000	Weak transcription	Adipose Nuclei	Adipose
16	chr15:50438000-50439200	Enhancers	HepG2	liver
17	chr15:50438200-50438600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:50438200-50438600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr15:50438200-50438600	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr15:50438200-50439000	Enhancers	Duodenum Mucosa	Duodenum
21	chr15:50438200-50439400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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