Variant report

Variant	rs2414244
Chromosome Location	chr15:53857613-53857614
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53854915..53857646-chr15:53874393..53876986,2	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10518730	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437669	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12439465	1.00[ASN][1000 genomes]
rs12439520	1.00[ASN][1000 genomes]
rs12439540	1.00[ASN][1000 genomes]
rs12439608	1.00[ASN][1000 genomes]
rs12439700	1.00[ASN][1000 genomes]
rs12441277	1.00[ASN][1000 genomes]
rs12442549	1.00[ASN][1000 genomes]
rs16966219	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16966222	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16966224	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16966231	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16966232	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16966247	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16966254	1.00[ASN][1000 genomes]
rs16966257	1.00[ASN][1000 genomes]
rs16966258	1.00[ASN][1000 genomes]
rs16966261	1.00[ASN][1000 genomes]
rs16966270	1.00[ASN][1000 genomes]
rs16966272	1.00[ASN][1000 genomes]
rs16966273	1.00[ASN][1000 genomes]
rs16966274	1.00[ASN][1000 genomes]
rs16966276	1.00[ASN][1000 genomes]
rs16966278	1.00[ASN][1000 genomes]
rs16966280	1.00[ASN][1000 genomes]
rs16966282	1.00[ASN][1000 genomes]
rs16966284	1.00[ASN][1000 genomes]
rs16966301	1.00[ASN][1000 genomes]
rs16966302	1.00[ASN][1000 genomes]
rs16966304	1.00[ASN][1000 genomes]
rs16966308	1.00[ASN][1000 genomes]
rs1906396	0.83[ASN][1000 genomes]
rs1906398	1.00[ASN][1000 genomes]
rs1906399	1.00[ASN][1000 genomes]
rs1906442	1.00[ASN][1000 genomes]
rs2414243	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs2414247	1.00[ASN][1000 genomes]
rs35968624	1.00[ASN][1000 genomes]
rs4457943	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4468551	1.00[ASN][1000 genomes]
rs55799724	1.00[ASN][1000 genomes]
rs56007818	1.00[ASN][1000 genomes]
rs56276502	1.00[ASN][1000 genomes]
rs56771214	1.00[ASN][1000 genomes]
rs57388125	0.81[AMR][1000 genomes]
rs58124844	1.00[ASN][1000 genomes]
rs59074347	1.00[ASN][1000 genomes]
rs59125438	1.00[ASN][1000 genomes]
rs59287715	1.00[ASN][1000 genomes]
rs59627084	1.00[ASN][1000 genomes]
rs60027343	1.00[ASN][1000 genomes]
rs60909239	1.00[ASN][1000 genomes]
rs61301076	1.00[ASN][1000 genomes]
rs61355899	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61554251	1.00[ASN][1000 genomes]
rs7164313	1.00[ASN][1000 genomes]
rs7165282	1.00[ASN][1000 genomes]
rs7165440	1.00[ASN][1000 genomes]
rs7170810	1.00[ASN][1000 genomes]
rs7171176	1.00[ASN][1000 genomes]
rs7171226	1.00[ASN][1000 genomes]
rs7171619	1.00[ASN][1000 genomes]
rs7171820	1.00[ASN][1000 genomes]
rs7171915	1.00[ASN][1000 genomes]
rs7172085	1.00[ASN][1000 genomes]
rs7172090	1.00[ASN][1000 genomes]
rs7172762	1.00[ASN][1000 genomes]
rs7173966	1.00[ASN][1000 genomes]
rs73406265	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73408216	1.00[ASN][1000 genomes]
rs73408217	1.00[ASN][1000 genomes]
rs73408222	1.00[ASN][1000 genomes]
rs73408230	1.00[ASN][1000 genomes]
rs73408236	1.00[ASN][1000 genomes]
rs73408239	1.00[ASN][1000 genomes]
rs74015825	1.00[ASN][1000 genomes]
rs74017465	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74017470	0.92[EUR][1000 genomes]
rs74018056	1.00[ASN][1000 genomes]
rs8037868	1.00[ASN][1000 genomes]
rs8038018	1.00[ASN][1000 genomes]
rs8039231	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904223	chr15:53665247-54340070	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv904224	chr15:53668018-54210677	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv833009	chr15:53752901-53935303	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv9267	chr15:53821005-54132612	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv569433	chr15:53828686-53860607	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv904225	chr15:53840665-53878948	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
9	nsv569434	chr15:53845097-53860607	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv569435	chr15:53845097-53966805	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53852600-53861800	Weak transcription	A549	lung
2	chr15:53854600-53861200	Weak transcription	Liver	Liver
3	chr15:53856000-53859600	Enhancers	Primary hematopoietic stem cells	blood
4	chr15:53856800-53859400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr15:53857000-53859200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr15:53857600-53859000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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