Variant report

Variant	rs2415233
Chromosome Location	chr15:74149460-74149461
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11632590	0.86[EUR][1000 genomes]
rs11635478	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12591658	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1452388	0.93[EUR][1000 genomes]
rs1452390	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1452391	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2127016	0.84[EUR][1000 genomes]
rs2127017	0.84[EUR][1000 genomes]
rs2415232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28493876	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35192808	0.92[EUR][1000 genomes]
rs35809461	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55841941	0.90[EUR][1000 genomes]
rs56047016	0.89[EUR][1000 genomes]
rs896591	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74148200-74149800	Enhancers	Thymus	Thymus
2	chr15:74148400-74150400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:74148800-74149600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr15:74148800-74149600	Enhancers	Brain Germinal Matrix	brain
5	chr15:74148800-74150000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:74149200-74149600	Enhancers	Right Atrium	heart
7	chr15:74149400-74149600	Enhancers	H9 Cell Line	embryonic stem cell
8	chr15:74149400-74154400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:74149400-74154600	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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