Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74814820..74820281-chr15:74822115..74824937,6	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10851872	0.91[EUR][1000 genomes]
rs17861099	1.00[AFR][1000 genomes]
rs2734633	0.88[CEU][hapmap]
rs4128436	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap]
rs56288642	1.00[AFR][1000 genomes]
rs7169023	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs7171785	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1044797	chr15:74773661-74819852	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74804800-74821000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:74812000-74816000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:74812000-74816000	Weak transcription	Hela-S3	cervix
4	chr15:74812000-74816200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:74812000-74816200	Weak transcription	HUVEC	blood vessel
6	chr15:74812000-74817800	Weak transcription	Osteobl	bone
7	chr15:74813600-74816200	Weak transcription	NH-A	brain
8	chr15:74813600-74817600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:74815200-74816400	Enhancers	Stomach Mucosa	stomach
10	chr15:74815400-74816200	Enhancers	Duodenum Mucosa	Duodenum
11	chr15:74815400-74818400	Enhancers	Placenta	Placenta
12	chr15:74815400-74818800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:74815400-74819400	Enhancers	HMEC	breast
14	chr15:74815600-74818200	Weak transcription	K562	blood
15	chr15:74815800-74816000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:74815800-74816000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:74815800-74816600	Weak transcription	Small Intestine	intestine
18	chr15:74815800-74817800	Enhancers	NHEK	skin
19	chr15:74815800-74819400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr15:74815800-74819600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search: