Variant report

Variant	rs10851872
Chromosome Location	chr15:74790183-74790184
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74789177..74791447-chr15:74793088..74795027,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2028166	0.86[ASW][hapmap];0.90[LWK][hapmap];0.96[YRI][hapmap]
rs2415240	0.91[EUR][1000 genomes]
rs2734633	0.88[CEU][hapmap]
rs4128436	0.85[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7169023	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes]
rs7171785	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1044797	chr15:74773661-74819852	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74754200-74798400	Weak transcription	Aorta	Aorta
2	chr15:74754400-74797600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:74754600-74800000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:74761000-74802200	Weak transcription	Fetal Intestine Small	intestine
5	chr15:74762600-74807400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr15:74763600-74796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:74765000-74800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:74767600-74804800	Weak transcription	Lung	lung
9	chr15:74768200-74797200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:74769800-74800600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:74770000-74796600	Weak transcription	HepG2	liver
12	chr15:74770800-74791800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:74774000-74798400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr15:74774000-74800000	Weak transcription	Pancreas	Pancrea
15	chr15:74774000-74803200	Weak transcription	Spleen	Spleen
16	chr15:74774000-74815200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr15:74774200-74800200	Weak transcription	Gastric	stomach
18	chr15:74774400-74803200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr15:74774600-74803200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr15:74775800-74807000	Weak transcription	Fetal Muscle Leg	muscle
21	chr15:74782000-74800400	Weak transcription	Adipose Nuclei	Adipose
22	chr15:74782200-74799600	Weak transcription	Placenta	Placenta
23	chr15:74782400-74811400	Weak transcription	Stomach Mucosa	stomach
24	chr15:74782600-74796200	Weak transcription	Hela-S3	cervix
25	chr15:74782800-74791800	Weak transcription	K562	blood
26	chr15:74782800-74794400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:74782800-74794400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr15:74782800-74794400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr15:74782800-74794800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr15:74782800-74796600	Weak transcription	Primary B cells from cord blood	blood
31	chr15:74782800-74798400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:74782800-74798800	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr15:74782800-74799000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr15:74782800-74799400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr15:74782800-74799600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr15:74782800-74800000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr15:74782800-74800000	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr15:74782800-74803400	Weak transcription	GM12878-XiMat	blood
39	chr15:74782800-74803800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr15:74782800-74803800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr15:74782800-74804000	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr15:74782800-74804000	Weak transcription	Fetal Thymus	thymus
43	chr15:74782800-74804200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:74782800-74804200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr15:74782800-74806000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:74782800-74807400	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr15:74783000-74792800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr15:74783000-74797000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr15:74783000-74800200	Weak transcription	Dnd41	blood
50	chr15:74783200-74803400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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