Variant report

Variant	rs2028166
Chromosome Location	chr15:74851507-74851508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74851254..74853728-chr15:74907218..74909276,2	MCF-7	breast:
2	chr15:74851230..74852983-chr15:74858490..74861014,2	MCF-7	breast:
3	chr15:74834610..74836763-chr15:74850865..74853184,2	K562	blood:

Variant related genes	Relation type
ENSG00000179361	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10468059	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11636305	1.00[EUR][1000 genomes]
rs11856442	1.00[EUR][1000 genomes]
rs12102046	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2470891	1.00[EUR][1000 genomes]
rs2470892	1.00[EUR][1000 genomes]
rs28455057	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs34439749	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7162280	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2028166	C15orf59	cis	lymphoblastoid	seeQTL

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74839000-74855600	Weak transcription	Aorta	Aorta
2	chr15:74839000-74863400	Weak transcription	Gastric	stomach
3	chr15:74839000-74863600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:74839200-74856400	Weak transcription	Fetal Kidney	kidney
5	chr15:74839200-74859200	Weak transcription	HepG2	liver
6	chr15:74839200-74860800	Weak transcription	Colonic Mucosa	Colon
7	chr15:74839200-74862000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr15:74839200-74865200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:74839200-74866400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:74839200-74866800	Weak transcription	Pancreas	Pancrea
11	chr15:74839400-74865800	Weak transcription	HUVEC	blood vessel
12	chr15:74839400-74880600	Weak transcription	Hela-S3	cervix
13	chr15:74839600-74862400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr15:74840000-74862000	Weak transcription	Colon Smooth Muscle	Colon
15	chr15:74840600-74890400	Weak transcription	Stomach Mucosa	stomach
16	chr15:74840800-74862200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:74841000-74862000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:74841000-74862000	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:74841200-74854800	Weak transcription	Spleen	Spleen
20	chr15:74841200-74857800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:74841200-74859400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:74841200-74862000	Weak transcription	Brain Substantia Nigra	brain
23	chr15:74841200-74862200	Weak transcription	Brain Angular Gyrus	brain
24	chr15:74841200-74862400	Weak transcription	Left Ventricle	heart
25	chr15:74841200-74862600	Weak transcription	Right Ventricle	heart
26	chr15:74841400-74857800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr15:74841400-74861800	Weak transcription	Thymus	Thymus
28	chr15:74842400-74862000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr15:74842400-74865000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr15:74842600-74862000	Weak transcription	NH-A	brain
31	chr15:74843000-74855800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:74843200-74856000	Weak transcription	Lung	lung
33	chr15:74843200-74862000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr15:74843200-74865600	Weak transcription	Esophagus	oesophagus
35	chr15:74843400-74855400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr15:74843400-74857600	Weak transcription	Fetal Muscle Leg	muscle
37	chr15:74843400-74857800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr15:74843400-74862400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:74843600-74862000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr15:74843800-74862200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr15:74844000-74855800	Weak transcription	HMEC	breast
42	chr15:74844000-74856000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:74844000-74862200	Weak transcription	HSMMtube	muscle
44	chr15:74844000-74862400	Weak transcription	Brain Germinal Matrix	brain
45	chr15:74844200-74861200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr15:74844600-74862400	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr15:74844800-74855400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr15:74845000-74863800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr15:74845400-74854800	Weak transcription	Placenta	Placenta
50	chr15:74845400-74855600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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