Variant report

Variant	rs2470891
Chromosome Location	chr15:75025333-75025334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11636305	1.00[EUR][1000 genomes]
rs11856442	1.00[EUR][1000 genomes]
rs12102046	1.00[ASW][hapmap];0.82[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs2028166	1.00[EUR][1000 genomes]
rs2470892	1.00[EUR][1000 genomes]
rs28455057	1.00[ASW][hapmap];0.87[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs34439749	1.00[EUR][1000 genomes]
rs4558383	1.00[EUR][1000 genomes]
rs4886411	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2763106	chr15:75014464-75034186	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75019400-75033800	Weak transcription	Right Atrium	heart
2	chr15:75022200-75025800	Enhancers	Liver	Liver
3	chr15:75022600-75025600	Enhancers	Hela-S3	cervix
4	chr15:75023800-75041600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:75024000-75025400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:75024200-75025600	Enhancers	HepG2	liver
7	chr15:75025200-75025400	Enhancers	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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