Variant report

Variant	rs4886411
Chromosome Location	chr15:75240123-75240124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11636305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12904608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1561892	1.00[EUR][1000 genomes]
rs2470891	1.00[EUR][1000 genomes]
rs2470892	1.00[EUR][1000 genomes]
rs4558383	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61615664	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75231000-75243200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:75237000-75244400	Weak transcription	Placenta	Placenta
3	chr15:75239800-75240800	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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