Variant report

Variant	rs1561892
Chromosome Location	chr15:75315095-75315096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr15:75314966-75316097	PBDE	blood:	n/a	n/a
2	POLR2A	chr15:75314902-75317178	HepG2	liver:	n/a	n/a
3	ZNF384	chr15:75315045-75316025	K562	blood:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75314427..75332274-chr15:75491598..75502885,56	MCF-7	breast:
2	chr15:75314438..75320960-chr15:75334023..75339188,6	K562	blood:
3	chr15:75314704..75323577-chr15:75491522..75500562,29	MCF-7	breast:
4	chr15:75300826..75305111-chr15:75313603..75318752,6	MCF-7	breast:
5	chr15:75247469..75252493-chr15:75314645..75318771,7	MCF-7	breast:
6	chr15:75313706..75315834-chr15:75659150..75661879,2	K562	blood:
7	chr15:75287417..75289225-chr15:75314885..75317439,2	MCF-7	breast:
8	chr15:75314737..75326433-chr15:75490770..75500610,30	K562	blood:
9	chr15:75302980..75304655-chr15:75315027..75317604,2	MCF-7	breast:
10	chr15:75286466..75289268-chr15:75313854..75316191,2	MCF-7	breast:
11	chr15:75246752..75249656-chr15:75313121..75316891,3	K562	blood:
12	chr15:75312886..75327225-chr15:75491522..75500922,36	K562	blood:
13	chr15:75287456..75290010-chr15:75314463..75316098,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260483	TF binding region
PPCDC	TF binding region
ENSG00000198794	Chromatin interaction
ENSG00000140400	Chromatin interaction
ENSG00000167173	Chromatin interaction
ENSG00000260274	Chromatin interaction
ENSG00000138621	Chromatin interaction
ENSG00000178718	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10851876	1.00[AMR][1000 genomes]
rs11636305	1.00[EUR][1000 genomes]
rs12904608	1.00[EUR][1000 genomes]
rs4558383	1.00[EUR][1000 genomes]
rs4886411	1.00[EUR][1000 genomes]
rs61615664	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv542435	chr15:75271788-75321117	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv527237	chr15:75305040-75321262	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75289000-75315800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:75289400-75315400	Weak transcription	Fetal Kidney	kidney
3	chr15:75290000-75316000	Weak transcription	Small Intestine	intestine
4	chr15:75293200-75315800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:75294600-75315600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:75301000-75315400	Weak transcription	Thymus	Thymus
7	chr15:75304000-75315800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:75304000-75316000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr15:75305000-75315800	Weak transcription	Right Ventricle	heart
10	chr15:75306200-75316000	Weak transcription	Fetal Brain Male	brain
11	chr15:75307800-75315800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:75308200-75315800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:75309000-75315800	Weak transcription	Placenta	Placenta
14	chr15:75309400-75315600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr15:75310000-75315200	Weak transcription	Brain Substantia Nigra	brain
16	chr15:75310200-75315200	Weak transcription	HepG2	liver
17	chr15:75310400-75315800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr15:75311000-75315600	Weak transcription	Liver	Liver
19	chr15:75311000-75315600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr15:75311200-75315800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:75311200-75315800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr15:75311400-75315400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:75311400-75315800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr15:75311400-75315800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:75311400-75315800	Weak transcription	Fetal Intestine Large	intestine
26	chr15:75311600-75315400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr15:75312600-75315600	Weak transcription	Brain Anterior Caudate	brain
28	chr15:75312600-75315800	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:75312600-75315800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr15:75312600-75315800	Weak transcription	Gastric	stomach
31	chr15:75312600-75315800	Weak transcription	Pancreas	Pancrea
32	chr15:75312800-75315400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr15:75312800-75315400	Weak transcription	Adipose Nuclei	Adipose
34	chr15:75312800-75315600	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr15:75312800-75315600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:75312800-75315600	Weak transcription	Spleen	Spleen
37	chr15:75312800-75315800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr15:75312800-75315800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:75312800-75315800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr15:75313200-75315600	Weak transcription	Brain Angular Gyrus	brain
41	chr15:75313400-75315600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr15:75313400-75315800	Weak transcription	Colonic Mucosa	Colon
43	chr15:75313600-75315400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr15:75313600-75315400	Weak transcription	Brain Hippocampus Middle	brain
45	chr15:75313600-75315600	Weak transcription	Brain Cingulate Gyrus	brain
46	chr15:75313600-75315600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr15:75313600-75315600	Weak transcription	Fetal Stomach	stomach
48	chr15:75313600-75315800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr15:75313800-75315600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:75313800-75315800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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