Variant report

Variant	rs61615664
Chromosome Location	chr15:75298732-75298733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75298103..75301325-chr15:75314824..75318127,4	K562	blood:

Variant related genes	Relation type
ENSG00000138621	Chromatin interaction
ENSG00000260483	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11636305	1.00[EUR][1000 genomes]
rs12904608	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1561892	1.00[EUR][1000 genomes]
rs4558383	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4886411	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569993	chr15:75242155-75483752	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	nsv542435	chr15:75271788-75321117	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75289000-75315800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:75289400-75299600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:75289400-75305000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr15:75289400-75305000	Weak transcription	Brain Substantia Nigra	brain
5	chr15:75289400-75305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:75289400-75315400	Weak transcription	Fetal Kidney	kidney
7	chr15:75289600-75304000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:75289600-75305400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr15:75289800-75298800	Weak transcription	Right Atrium	heart
10	chr15:75289800-75299200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr15:75289800-75299600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr15:75289800-75304000	Weak transcription	Brain Hippocampus Middle	brain
13	chr15:75290000-75303600	Weak transcription	Brain Angular Gyrus	brain
14	chr15:75290000-75303800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:75290000-75304400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:75290000-75304400	Weak transcription	HepG2	liver
17	chr15:75290000-75309400	Weak transcription	Gastric	stomach
18	chr15:75290000-75316000	Weak transcription	Small Intestine	intestine
19	chr15:75290200-75299200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:75290200-75302400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:75290400-75304800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:75290400-75304800	Weak transcription	Brain Anterior Caudate	brain
23	chr15:75290600-75304400	Weak transcription	Fetal Stomach	stomach
24	chr15:75291400-75299600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr15:75291400-75305400	Weak transcription	Fetal Brain Male	brain
26	chr15:75291800-75299000	Weak transcription	GM12878-XiMat	blood
27	chr15:75292000-75305000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr15:75292600-75305400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr15:75293000-75304000	Weak transcription	Fetal Intestine Large	intestine
30	chr15:75293200-75315800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr15:75294600-75312200	Weak transcription	Adipose Nuclei	Adipose
32	chr15:75294600-75315600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr15:75296800-75302000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:75296800-75303600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr15:75297200-75304600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:75297400-75305000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:75297600-75303800	Weak transcription	Fetal Brain Female	brain
38	chr15:75297800-75299600	Weak transcription	Brain Germinal Matrix	brain
39	chr15:75297800-75302000	Weak transcription	Fetal Intestine Small	intestine
40	chr15:75298200-75304000	Weak transcription	Pancreas	Pancrea
41	chr15:75298200-75305600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links