Variant report

Variant	rs12102046
Chromosome Location	chr15:74876872-74876873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74872905..74875124-chr15:74875646..74878428,3	K562	blood:
2	chr15:74876775..74879625-chr15:74890488..74893585,3	MCF-7	breast:
3	chr15:74875061..74877011-chr15:74906661..74909529,4	K562	blood:

Variant related genes	Relation type
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10468059	1.00[ASW][hapmap];0.86[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11636305	1.00[EUR][1000 genomes]
rs11856442	1.00[EUR][1000 genomes]
rs2028166	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2470891	1.00[EUR][1000 genomes]
rs2470892	1.00[EUR][1000 genomes]
rs28455057	1.00[ASW][hapmap];0.93[LWK][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34439749	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7162280	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	esv1812223	chr15:74869438-74948063	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74839400-74880600	Weak transcription	Hela-S3	cervix
2	chr15:74840600-74890400	Weak transcription	Stomach Mucosa	stomach
3	chr15:74845400-74880200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:74845800-74890400	Weak transcription	A549	lung
5	chr15:74851800-74887800	Strong transcription	GM12878-XiMat	blood
6	chr15:74854800-74888600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr15:74857600-74888200	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr15:74857800-74887600	Strong transcription	Primary T cells from cord blood	blood
9	chr15:74859000-74888600	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:74859400-74879200	Strong transcription	H9 Cell Line	embryonic stem cell
11	chr15:74859600-74888000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr15:74860400-74877800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr15:74860400-74889000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr15:74860600-74880200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr15:74860800-74888400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr15:74861200-74889800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr15:74861800-74879200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr15:74863200-74880600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:74863200-74880800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr15:74863400-74880600	Weak transcription	NHLF	lung
21	chr15:74863600-74890800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr15:74863800-74880200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr15:74863800-74882200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr15:74863800-74890400	Weak transcription	Psoas Muscle	Psoas
25	chr15:74864200-74881000	Weak transcription	Fetal Brain Male	brain
26	chr15:74864400-74887000	Strong transcription	Primary B cells from peripheral blood	blood
27	chr15:74864400-74888400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr15:74865600-74880200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr15:74865800-74882600	Weak transcription	Small Intestine	intestine
30	chr15:74866200-74880600	Weak transcription	Osteobl	bone
31	chr15:74866800-74880400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr15:74866800-74880600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:74866800-74880600	Weak transcription	NH-A	brain
34	chr15:74866800-74890800	Weak transcription	Ovary	ovary
35	chr15:74867000-74882200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:74868000-74877200	Weak transcription	Fetal Lung	lung
37	chr15:74868000-74882200	Weak transcription	Dnd41	blood
38	chr15:74868200-74880200	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr15:74868400-74880200	Weak transcription	Fetal Kidney	kidney
40	chr15:74868400-74886800	Strong transcription	Fetal Intestine Small	intestine
41	chr15:74868600-74881000	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr15:74868800-74880600	Weak transcription	NHDF-Ad	bronchial
43	chr15:74868800-74882600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr15:74869400-74882200	Weak transcription	Primary hematopoietic stem cells	blood
45	chr15:74869400-74882800	Weak transcription	Colon Smooth Muscle	Colon
46	chr15:74869600-74880800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr15:74869600-74881800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr15:74869600-74882400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr15:74870200-74880800	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr15:74871200-74882000	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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