Variant report

Variant	rs2416371
Chromosome Location	chr5:113775870-113775871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12523150	0.84[EUR][1000 genomes]
rs13155731	0.88[CEU][hapmap]
rs13163662	0.82[GIH][hapmap]
rs13173796	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs13187753	0.81[CEU][hapmap]
rs4705665	0.88[CEU][hapmap];0.89[GIH][hapmap];0.90[TSI][hapmap]
rs4705668	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113769800-113776200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:113770600-113782200	Weak transcription	Liver	Liver
3	chr5:113770600-113784600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:113772000-113777000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:113772000-113782800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr5:113772600-113776400	Enhancers	Fetal Brain Male	brain
7	chr5:113774000-113779800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:113774200-113779000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:113774400-113784800	Weak transcription	Fetal Brain Female	brain
10	chr5:113774600-113782600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:113775400-113776200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:113775600-113782800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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