Variant report

Variant	rs13163662
Chromosome Location	chr5:113756805-113756806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1013168	0.95[CEU][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1072922	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12188044	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12189479	0.89[ASN][1000 genomes]
rs12519857	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12520509	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12523150	0.92[ASN][1000 genomes]
rs13155731	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs13156919	0.90[ASN][1000 genomes]
rs13157115	0.84[ASN][1000 genomes]
rs13157173	0.90[ASN][1000 genomes]
rs13160034	0.83[ASN][1000 genomes]
rs13168891	0.84[ASN][1000 genomes]
rs13173796	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.92[ASN][1000 genomes]
rs13174521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13176052	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13178324	0.84[ASN][1000 genomes]
rs13179135	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13181189	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182217	0.84[ASN][1000 genomes]
rs13182224	0.84[ASN][1000 genomes]
rs13182997	0.83[ASN][1000 genomes]
rs13183081	0.84[ASN][1000 genomes]
rs13183393	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13184658	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13186627	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13187461	0.83[ASN][1000 genomes]
rs13187753	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13190297	0.81[ASN][1000 genomes]
rs13190428	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1457760	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1457761	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs1457762	0.91[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs1496389	0.89[ASN][1000 genomes]
rs1496390	0.91[CHB][hapmap];0.86[JPT][hapmap];0.84[LWK][hapmap];0.89[ASN][1000 genomes]
rs163210	0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs168090	0.88[JPT][hapmap]
rs181949	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs2125146	0.87[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2416371	0.82[GIH][hapmap]
rs2900084	0.80[ASN][1000 genomes]
rs337683	0.88[JPT][hapmap]
rs337685	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs337689	0.88[JPT][hapmap]
rs337691	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs337699	0.88[JPT][hapmap]
rs337705	0.85[JPT][hapmap]
rs337707	0.86[JPT][hapmap]
rs337708	0.88[JPT][hapmap]
rs337709	0.88[JPT][hapmap]
rs337711	0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs337714	0.88[JPT][hapmap]
rs338625	0.88[JPT][hapmap]
rs36942	0.83[CHB][hapmap]
rs36945	0.83[CHB][hapmap]
rs36949	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs36950	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs3857431	0.86[ASW][hapmap];0.95[CEU][hapmap];0.82[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs388084	0.88[JPT][hapmap]
rs4705502	0.83[ASN][1000 genomes]
rs4705503	0.83[ASN][1000 genomes]
rs4705504	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4705665	0.86[ASW][hapmap];0.82[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4705667	1.00[CEU][hapmap];0.84[CHB][hapmap];0.88[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4705668	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6859284	0.88[JPT][hapmap]
rs716845	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs993910	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113754000-113757200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:113756000-113758000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:113756200-113759400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:113756400-113770000	Weak transcription	Fetal Heart	heart
5	chr5:113756600-113770200	Weak transcription	Liver	Liver

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