Variant report

Variant	rs1013168
Chromosome Location	chr5:113749460-113749461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:113744294..113747144-chr5:113748947..113751115,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1072922	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12188044	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12519857	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12520509	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13155731	0.88[JPT][hapmap]
rs13163662	0.95[CEU][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13173796	0.88[JPT][hapmap]
rs13174521	0.95[CEU][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13176052	0.88[JPT][hapmap]
rs13179135	0.95[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13181189	0.95[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13183393	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13184658	0.88[JPT][hapmap]
rs13186627	0.88[JPT][hapmap]
rs13187753	0.88[JPT][hapmap]
rs13190428	1.00[CEU][hapmap];0.83[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1457760	0.88[JPT][hapmap]
rs1457762	0.88[JPT][hapmap]
rs163210	0.88[JPT][hapmap]
rs163211	0.84[ASN][1000 genomes]
rs168090	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2125146	1.00[CEU][hapmap];0.83[CHB][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2900084	0.94[ASN][1000 genomes]
rs337683	0.82[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs337684	0.86[ASN][1000 genomes]
rs337685	0.88[JPT][hapmap]
rs337689	1.00[JPT][hapmap]
rs337691	0.88[JPT][hapmap]
rs337699	1.00[JPT][hapmap]
rs337704	0.92[ASN][1000 genomes]
rs337705	0.91[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs337707	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs337708	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs337709	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs337710	0.84[ASN][1000 genomes]
rs337711	0.88[JPT][hapmap]
rs337712	0.84[ASN][1000 genomes]
rs337714	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs338623	0.88[ASN][1000 genomes]
rs338625	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs36949	0.88[JPT][hapmap]
rs36950	0.88[JPT][hapmap]
rs3857431	1.00[CEU][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs388084	1.00[JPT][hapmap]
rs4705504	0.88[JPT][hapmap]
rs4705665	0.81[GIH][hapmap];0.88[JPT][hapmap]
rs4705667	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4705668	0.88[JPT][hapmap]
rs6859284	0.85[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs716845	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113742600-113753200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr5:113743800-113751600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:113744800-113750800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:113744800-113753200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:113744800-113754200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:113746400-113751600	Enhancers	Liver	Liver
7	chr5:113747200-113749800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:113747400-113749600	Enhancers	HMEC	breast
9	chr5:113747400-113751600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:113747800-113749800	Enhancers	NHDF-Ad	bronchial
11	chr5:113748200-113749600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:113748400-113749600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:113748800-113751600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:113749000-113749600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:113749000-113749600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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