Variant report

Variant	rs36950
Chromosome Location	chr5:113705469-113705470
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:113696986..113699055-chr5:113704418..113706900,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000080709	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1013168	0.88[JPT][hapmap]
rs1072922	1.00[JPT][hapmap]
rs12188044	1.00[JPT][hapmap]
rs13155731	1.00[JPT][hapmap]
rs13157115	0.90[ASN][1000 genomes]
rs13163662	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs13168891	0.90[ASN][1000 genomes]
rs13173796	1.00[JPT][hapmap]
rs13174521	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs13176052	0.91[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs13178324	0.90[ASN][1000 genomes]
rs13179135	1.00[JPT][hapmap]
rs13181189	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs13182217	0.90[ASN][1000 genomes]
rs13182224	0.90[ASN][1000 genomes]
rs13182997	0.88[ASN][1000 genomes]
rs13183081	0.90[ASN][1000 genomes]
rs13183393	1.00[JPT][hapmap]
rs13184658	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs13186627	1.00[JPT][hapmap]
rs13187753	1.00[JPT][hapmap]
rs13190428	1.00[JPT][hapmap]
rs1457760	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1457761	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs1457762	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1496390	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs163210	0.83[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs163301	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs163302	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs163303	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs163304	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs168090	0.88[JPT][hapmap]
rs168110	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs181949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2125146	1.00[JPT][hapmap]
rs337683	0.88[JPT][hapmap]
rs337685	1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs337689	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs337691	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs337695	0.90[ASN][1000 genomes]
rs337699	0.92[CHB][hapmap];0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs337705	0.85[JPT][hapmap]
rs337707	0.86[JPT][hapmap]
rs337708	0.88[JPT][hapmap]
rs337709	0.88[JPT][hapmap]
rs337711	0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs337714	0.88[JPT][hapmap]
rs338625	0.88[JPT][hapmap]
rs36938	0.84[CEU][hapmap];0.92[CHB][hapmap];0.84[AMR][1000 genomes]
rs36942	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs36945	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36946	0.85[CEU][hapmap];0.92[CHB][hapmap];0.84[MEX][hapmap];0.84[AMR][1000 genomes]
rs36947	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs36949	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36955	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36959	0.86[EUR][1000 genomes]
rs3857431	1.00[JPT][hapmap]
rs388084	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs40179	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs402876	0.84[YRI][hapmap]
rs4705502	0.88[ASN][1000 genomes]
rs4705503	0.88[ASN][1000 genomes]
rs4705504	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4705665	1.00[JPT][hapmap]
rs4705667	0.88[JPT][hapmap]
rs4705668	1.00[JPT][hapmap]
rs636200	0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6859284	0.88[JPT][hapmap]
rs993910	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113699800-113712600	Weak transcription	Pancreas	Pancrea
2	chr5:113699800-113714800	Weak transcription	Left Ventricle	heart
3	chr5:113700000-113706400	Weak transcription	Brain Hippocampus Middle	brain
4	chr5:113700200-113709800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:113700600-113714200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:113701200-113707400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:113701400-113710200	Weak transcription	Liver	Liver
8	chr5:113701600-113705600	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:113701800-113705600	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:113702000-113706400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:113702200-113708000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr5:113702800-113716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr5:113703800-113707400	Enhancers	Dnd41	blood
14	chr5:113704000-113714200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr5:113704400-113711800	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr5:113705200-113706400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:113705200-113707000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:113705400-113714200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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