Variant report

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs163211	0.87[ASN][1000 genomes]
rs163301	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs163302	0.86[AMR][1000 genomes]
rs163303	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs163304	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs168090	0.82[ASN][1000 genomes]
rs168110	0.86[AMR][1000 genomes]
rs181949	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs337683	0.82[ASN][1000 genomes]
rs337684	0.82[ASN][1000 genomes]
rs337689	0.92[ASN][1000 genomes]
rs337699	1.00[ASN][1000 genomes]
rs337704	0.81[ASN][1000 genomes]
rs337705	0.82[ASN][1000 genomes]
rs337707	0.87[ASN][1000 genomes]
rs337708	0.82[ASN][1000 genomes]
rs337709	0.86[ASN][1000 genomes]
rs337710	0.87[ASN][1000 genomes]
rs337712	0.87[ASN][1000 genomes]
rs337714	0.88[ASN][1000 genomes]
rs338622	0.88[ASN][1000 genomes]
rs338625	0.88[ASN][1000 genomes]
rs338663	0.81[ASN][1000 genomes]
rs338666	0.88[ASN][1000 genomes]
rs36938	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36942	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36945	0.86[AMR][1000 genomes]
rs36946	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36949	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs36950	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs36957	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs388084	0.92[ASN][1000 genomes]
rs40179	0.86[AMR][1000 genomes]
rs636200	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6859284	0.82[ASN][1000 genomes]
rs921981	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113699800-113712600	Weak transcription	Pancreas	Pancrea
2	chr5:113699800-113714800	Weak transcription	Left Ventricle	heart
3	chr5:113700000-113706400	Weak transcription	Brain Hippocampus Middle	brain
4	chr5:113700200-113702200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:113700200-113709800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr5:113700600-113702200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:113700600-113714200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:113701200-113707400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:113701400-113702400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:113701400-113710200	Weak transcription	Liver	Liver
11	chr5:113701600-113702400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:113701600-113705600	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:113701800-113705600	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:113702000-113704000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr5:113702000-113706400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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