Variant report

Variant	rs337704
Chromosome Location	chr5:113736678-113736679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1013168	0.92[ASN][1000 genomes]
rs163210	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs163211	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs168090	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2900084	0.86[ASN][1000 genomes]
rs337683	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs337684	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs337689	0.84[ASN][1000 genomes]
rs337699	0.81[ASN][1000 genomes]
rs337705	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs337707	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs337708	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs337709	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs337710	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs337711	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs337712	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs337714	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs338622	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs338623	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs338625	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs338663	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs338664	0.80[ASN][1000 genomes]
rs338666	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36947	0.81[ASN][1000 genomes]
rs388084	0.84[ASN][1000 genomes]
rs4705667	0.86[ASN][1000 genomes]
rs6859284	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs921981	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113731800-113739800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:113731800-113743400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:113732000-113742600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:113733000-113740200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:113736000-113742800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:113736400-113738000	Weak transcription	Liver	Liver

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