Variant report

Variant	rs2900084
Chromosome Location	chr5:113757039-113757040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1013168	0.94[ASN][1000 genomes]
rs12519857	0.80[ASN][1000 genomes]
rs12520509	0.80[ASN][1000 genomes]
rs13163662	0.80[ASN][1000 genomes]
rs13174521	0.80[ASN][1000 genomes]
rs13181189	0.80[ASN][1000 genomes]
rs168090	0.85[ASN][1000 genomes]
rs337683	0.91[ASN][1000 genomes]
rs337684	0.91[ASN][1000 genomes]
rs337704	0.86[ASN][1000 genomes]
rs337705	0.85[ASN][1000 genomes]
rs337708	0.85[ASN][1000 genomes]
rs337714	0.84[ASN][1000 genomes]
rs338622	0.84[ASN][1000 genomes]
rs338623	0.88[ASN][1000 genomes]
rs338625	0.84[ASN][1000 genomes]
rs338666	0.84[ASN][1000 genomes]
rs4705667	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6859284	0.91[ASN][1000 genomes]
rs921981	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv882729	chr5:113743628-114497708	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113754000-113757200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:113756000-113758000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:113756200-113759400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:113756400-113770000	Weak transcription	Fetal Heart	heart
5	chr5:113756600-113770200	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links