Variant report

Variant	rs12519857
Chromosome Location	chr5:113733109-113733110
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1013168	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1072922	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12188044	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12189479	0.89[ASN][1000 genomes]
rs12520509	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12523150	0.92[ASN][1000 genomes]
rs13155731	0.92[ASN][1000 genomes]
rs13156919	0.90[ASN][1000 genomes]
rs13157115	0.84[ASN][1000 genomes]
rs13157173	0.90[ASN][1000 genomes]
rs13160034	0.83[ASN][1000 genomes]
rs13163662	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13168891	0.84[ASN][1000 genomes]
rs13173796	0.92[ASN][1000 genomes]
rs13174521	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13176052	0.89[ASN][1000 genomes]
rs13178324	0.84[ASN][1000 genomes]
rs13179135	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13181189	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182217	0.84[ASN][1000 genomes]
rs13182224	0.84[ASN][1000 genomes]
rs13182997	0.83[ASN][1000 genomes]
rs13183081	0.84[ASN][1000 genomes]
rs13183393	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13184658	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13186627	0.90[ASN][1000 genomes]
rs13187461	0.83[ASN][1000 genomes]
rs13187753	0.90[ASN][1000 genomes]
rs13190297	0.81[ASN][1000 genomes]
rs13190428	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1457760	0.89[ASN][1000 genomes]
rs1457762	0.84[ASN][1000 genomes]
rs1496389	0.89[ASN][1000 genomes]
rs1496390	0.89[ASN][1000 genomes]
rs163210	0.86[ASN][1000 genomes]
rs2125146	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2900084	0.80[ASN][1000 genomes]
rs337711	0.86[ASN][1000 genomes]
rs3857431	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4705502	0.83[ASN][1000 genomes]
rs4705503	0.83[ASN][1000 genomes]
rs4705504	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4705665	0.92[ASN][1000 genomes]
rs4705667	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4705668	0.92[ASN][1000 genomes]
rs716845	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs993910	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113731800-113739800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:113731800-113743400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:113732000-113742600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:113732200-113734800	Weak transcription	Liver	Liver
5	chr5:113733000-113740200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links