Variant report

Variant	rs4705502
Chromosome Location	chr5:113714069-113714070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs12187015	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12189161	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12189350	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12189479	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12518600	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12518601	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12519857	0.83[ASN][1000 genomes]
rs12520509	0.83[ASN][1000 genomes]
rs13157115	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13160034	0.83[ASN][1000 genomes]
rs13163662	0.83[ASN][1000 genomes]
rs13168891	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13173571	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13174521	0.83[ASN][1000 genomes]
rs13176052	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13178324	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13181189	0.83[ASN][1000 genomes]
rs13182217	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13182224	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13182997	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183081	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13183492	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13184658	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13187461	0.83[ASN][1000 genomes]
rs13189863	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13190297	0.83[ASN][1000 genomes]
rs1457760	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1457762	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1496389	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1496390	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs163304	0.88[ASN][1000 genomes]
rs181949	0.88[ASN][1000 genomes]
rs337685	0.81[ASN][1000 genomes]
rs337691	0.81[ASN][1000 genomes]
rs337695	0.81[ASN][1000 genomes]
rs36949	0.88[ASN][1000 genomes]
rs36950	0.88[ASN][1000 genomes]
rs4705500	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4705503	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705504	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4705661	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4705662	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs993910	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113699800-113714800	Weak transcription	Left Ventricle	heart
2	chr5:113700600-113714200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:113702800-113716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:113704000-113714200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:113705400-113714200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:113712000-113714400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:113712400-113714200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:113712600-113714400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr5:113713000-113714400	Flanking Active TSS	Liver	Liver
10	chr5:113713000-113714600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:113713000-113715000	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr5:113713200-113730800	Weak transcription	Brain Anterior Caudate	brain
13	chr5:113713600-113714600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:113713800-113714800	Weak transcription	Pancreas	Pancrea
15	chr5:113714000-113714600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:113714000-113714600	Enhancers	Gastric	stomach
17	chr5:113714000-113714800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr5:113714000-113714800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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