Variant report

Variant	rs12189161
Chromosome Location	chr5:113684278-113684279
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12187015	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12189350	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12189479	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12517304	0.82[ASN][1000 genomes]
rs12518600	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12518601	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12520028	0.85[ASN][1000 genomes]
rs13157115	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13163662	0.81[CHB][hapmap]
rs13168891	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13173571	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13174521	0.83[CHB][hapmap]
rs13176052	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13178324	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13181189	0.83[CHB][hapmap]
rs13182217	0.88[AMR][1000 genomes]
rs13182224	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13182997	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13183081	0.88[AMR][1000 genomes]
rs13183492	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13184658	0.95[CEU][hapmap];0.92[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13189863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457760	0.95[CEU][hapmap];0.92[CHB][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1457761	0.91[CHB][hapmap]
rs1457762	0.82[CEU][hapmap];0.90[CHB][hapmap];0.88[AMR][1000 genomes]
rs1496389	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1496390	0.95[CEU][hapmap];0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs163301	0.87[ASN][1000 genomes]
rs163302	0.87[ASN][1000 genomes]
rs163303	0.87[ASN][1000 genomes]
rs168110	0.87[ASN][1000 genomes]
rs181949	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs337685	0.81[CHB][hapmap]
rs337691	0.81[CHB][hapmap]
rs36938	0.84[CHB][hapmap]
rs36942	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs36945	0.81[CHB][hapmap];0.86[ASN][1000 genomes]
rs36949	0.81[CHB][hapmap]
rs36950	0.81[CHB][hapmap]
rs36955	0.85[ASN][1000 genomes]
rs40179	0.86[ASN][1000 genomes]
rs4705500	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4705502	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4705503	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4705504	0.95[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4705661	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4705662	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs636200	0.87[ASN][1000 genomes]
rs7704337	0.83[ASN][1000 genomes]
rs993910	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113683400-113690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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