Variant report

Variant	rs337691
Chromosome Location	chr5:113725494-113725495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1013168	0.88[JPT][hapmap]
rs1072922	1.00[JPT][hapmap]
rs12188044	1.00[JPT][hapmap]
rs12189479	0.90[ASN][1000 genomes]
rs13155731	1.00[JPT][hapmap]
rs13163662	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs13173796	1.00[JPT][hapmap]
rs13174521	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs13176052	0.91[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13179135	1.00[JPT][hapmap]
rs13181189	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs13182997	0.81[ASN][1000 genomes]
rs13183393	1.00[JPT][hapmap]
rs13184658	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13186627	1.00[JPT][hapmap]
rs13187753	1.00[JPT][hapmap]
rs13190297	0.83[ASN][1000 genomes]
rs13190428	1.00[JPT][hapmap]
rs1457760	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1457761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1457762	0.85[CEU][hapmap];0.91[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap]
rs1496389	0.90[ASN][1000 genomes]
rs1496390	0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs163210	0.83[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs163304	0.90[ASN][1000 genomes]
rs168090	0.88[JPT][hapmap]
rs181949	1.00[CHB][hapmap];0.94[CHD][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs2125146	1.00[JPT][hapmap]
rs337683	0.88[JPT][hapmap]
rs337685	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337689	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs337695	1.00[CEU][hapmap];0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337699	1.00[CEU][hapmap];0.92[CHB][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs337705	0.85[JPT][hapmap]
rs337707	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs337708	0.88[JPT][hapmap]
rs337709	0.81[CEU][hapmap];0.88[JPT][hapmap]
rs337711	0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs337714	0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs338622	0.81[ASN][1000 genomes]
rs338625	0.81[CEU][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs338666	0.81[ASN][1000 genomes]
rs36938	0.92[CHB][hapmap]
rs36942	1.00[CHB][hapmap]
rs36945	1.00[CHB][hapmap]
rs36946	0.92[CHB][hapmap];0.80[MEX][hapmap]
rs36949	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs36950	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs3857431	1.00[JPT][hapmap]
rs388084	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4705502	0.81[ASN][1000 genomes]
rs4705503	0.81[ASN][1000 genomes]
rs4705504	0.82[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4705665	1.00[JPT][hapmap]
rs4705667	0.88[JPT][hapmap]
rs4705668	1.00[JPT][hapmap]
rs6859284	0.88[JPT][hapmap]
rs921981	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs337691	COMMD10	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113713200-113730800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:113715000-113727800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:113722800-113725600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:113723800-113727400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr5:113723800-113728000	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:113724400-113726400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:113725000-113726200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:113725000-113726400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:113725000-113726400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:113725000-113727800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr5:113725000-113728200	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:113725200-113726400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:113725200-113726800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:113725200-113727400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:113725200-113730200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr5:113725200-113730800	Enhancers	Liver	Liver
17	chr5:113725400-113725800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr5:113725400-113725800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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