Variant report

Variant	rs36946
Chromosome Location	chr5:113700382-113700383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:113697099..113699226-chr5:113699378..113701050,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000080709	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs13176052	0.83[CHB][hapmap]
rs13184658	0.83[CHB][hapmap]
rs1457760	0.83[CHB][hapmap]
rs1457761	0.91[CHB][hapmap]
rs1457762	0.83[CHB][hapmap]
rs1496390	0.83[CHB][hapmap]
rs163301	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs163302	0.85[AMR][1000 genomes]
rs163303	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs163304	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs168110	0.85[AMR][1000 genomes]
rs181949	0.85[CEU][hapmap];0.92[CHB][hapmap];0.88[MEX][hapmap];0.85[AMR][1000 genomes]
rs337685	0.92[CHB][hapmap]
rs337689	1.00[CHB][hapmap];0.83[CHD][hapmap];0.84[MEX][hapmap];0.81[ASN][1000 genomes]
rs337691	0.92[CHB][hapmap];0.80[MEX][hapmap]
rs337699	1.00[CHB][hapmap];0.83[CHD][hapmap];0.84[MEX][hapmap];0.89[ASN][1000 genomes]
rs337714	0.85[CHB][hapmap];0.83[CHD][hapmap]
rs338625	0.85[CHB][hapmap];0.83[CHD][hapmap]
rs36938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36942	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36945	0.92[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.85[AMR][1000 genomes]
rs36947	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36949	0.85[CEU][hapmap];0.92[CHB][hapmap];0.87[MEX][hapmap];0.84[AMR][1000 genomes]
rs36950	0.85[CEU][hapmap];0.92[CHB][hapmap];0.84[MEX][hapmap];0.84[AMR][1000 genomes]
rs36955	0.81[AMR][1000 genomes]
rs36957	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs36959	0.84[ASN][1000 genomes]
rs388084	1.00[CHB][hapmap];0.83[CHD][hapmap];0.84[MEX][hapmap];0.81[ASN][1000 genomes]
rs40179	0.85[AMR][1000 genomes]
rs636200	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6859284	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113695600-113701000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:113699400-113700400	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr5:113699400-113700600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr5:113699800-113701200	Active TSS	H1 Cell Line	embryonic stem cell
5	chr5:113699800-113712600	Weak transcription	Pancreas	Pancrea
6	chr5:113699800-113714800	Weak transcription	Left Ventricle	heart
7	chr5:113700000-113700600	Active TSS	Fetal Brain Female	brain
8	chr5:113700000-113700800	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr5:113700000-113701600	Transcr. at gene 5' and 3'	HUES48 Cell Line	embryonic stem cell
10	chr5:113700000-113706400	Weak transcription	Brain Hippocampus Middle	brain
11	chr5:113700200-113700400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr5:113700200-113700600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr5:113700200-113700600	Enhancers	Fetal Brain Male	brain
14	chr5:113700200-113700800	Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr5:113700200-113701200	Weak transcription	Brain Angular Gyrus	brain
16	chr5:113700200-113701400	Enhancers	Liver	Liver
17	chr5:113700200-113702200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr5:113700200-113709800	Weak transcription	Brain Cingulate Gyrus	brain

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