Variant report
| Variant | rs636200 |
|---|---|
| Chromosome Location | chr5:113686082-113686083 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs12187015 | 0.90[ASN][1000 genomes] |
| rs12189161 | 0.87[ASN][1000 genomes] |
| rs12189350 | 0.90[ASN][1000 genomes] |
| rs12518600 | 0.84[ASN][1000 genomes] |
| rs12518601 | 0.84[ASN][1000 genomes] |
| rs13173571 | 0.81[ASN][1000 genomes] |
| rs13183492 | 0.81[ASN][1000 genomes] |
| rs13189863 | 0.87[ASN][1000 genomes] |
| rs163301 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs163302 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs163303 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs163304 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs168110 | 0.89[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs181949 | 0.89[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs36938 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs36942 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs36945 | 0.89[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs36946 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs36947 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs36949 | 0.89[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs36950 | 0.89[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs36955 | 0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs36957 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs40179 | 0.89[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4705500 | 0.84[ASN][1000 genomes] |
| rs4705661 | 0.84[ASN][1000 genomes] |
| rs4705662 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882728 | chr5:113651694-113731423 | Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv830451 | chr5:113684301-113829833 | Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:113683400-113690600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
