Variant report

Variant	rs12518601
Chromosome Location	chr5:113661283-113661284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1021577	0.81[ASN][1000 genomes]
rs12187015	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12189161	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12189350	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12189479	0.87[EUR][1000 genomes]
rs12517304	0.91[ASN][1000 genomes]
rs12518600	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12520028	0.88[ASN][1000 genomes]
rs13157115	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13168891	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13173571	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13176052	0.90[EUR][1000 genomes]
rs13178324	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13182217	0.82[AMR][1000 genomes]
rs13182224	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13182997	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13183081	0.82[AMR][1000 genomes]
rs13183492	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13184658	0.88[EUR][1000 genomes]
rs13189863	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1457760	0.88[EUR][1000 genomes]
rs1457762	0.82[AMR][1000 genomes]
rs1496389	0.90[EUR][1000 genomes]
rs1496390	0.90[EUR][1000 genomes]
rs163301	0.84[ASN][1000 genomes]
rs163302	0.84[ASN][1000 genomes]
rs163303	0.84[ASN][1000 genomes]
rs168110	0.84[ASN][1000 genomes]
rs36942	0.83[ASN][1000 genomes]
rs36945	0.83[ASN][1000 genomes]
rs36955	0.88[ASN][1000 genomes]
rs40179	0.83[ASN][1000 genomes]
rs4705500	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705502	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4705503	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4705504	0.88[EUR][1000 genomes]
rs4705661	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705662	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs636200	0.84[ASN][1000 genomes]
rs7704337	0.90[ASN][1000 genomes]
rs993910	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113660000-113662000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:113660000-113662000	Enhancers	HUVEC	blood vessel
3	chr5:113660400-113663000	Weak transcription	NHDF-Ad	bronchial
4	chr5:113660800-113662000	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links