Variant report
| Variant | rs12520028 |
|---|---|
| Chromosome Location | chr5:113659909-113659910 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs1021577 | 0.86[ASN][1000 genomes] |
| rs11743003 | 0.82[ASN][1000 genomes] |
| rs12187015 | 0.82[ASN][1000 genomes] |
| rs12189161 | 0.85[ASN][1000 genomes] |
| rs12189350 | 0.82[ASN][1000 genomes] |
| rs12517304 | 0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12518600 | 0.88[ASN][1000 genomes] |
| rs12518601 | 0.88[ASN][1000 genomes] |
| rs13155731 | 0.80[CHB][hapmap] |
| rs13170487 | 0.82[ASN][1000 genomes] |
| rs13173571 | 0.92[ASN][1000 genomes] |
| rs13173796 | 0.80[CHB][hapmap] |
| rs13176052 | 0.81[GIH][hapmap] |
| rs13183492 | 0.92[ASN][1000 genomes] |
| rs13186627 | 0.88[CHB][hapmap] |
| rs13187753 | 0.90[CHB][hapmap] |
| rs13189863 | 0.85[ASN][1000 genomes] |
| rs13190297 | 0.83[EUR][1000 genomes] |
| rs1457761 | 0.81[CHB][hapmap] |
| rs1496390 | 0.81[GIH][hapmap] |
| rs36942 | 0.85[JPT][hapmap] |
| rs36945 | 0.85[JPT][hapmap] |
| rs36955 | 0.83[ASN][1000 genomes] |
| rs41236 | 0.82[ASN][1000 genomes] |
| rs4705500 | 0.88[ASN][1000 genomes] |
| rs4705504 | 0.80[CHB][hapmap];0.81[GIH][hapmap] |
| rs4705661 | 0.88[ASN][1000 genomes] |
| rs4705662 | 0.88[ASN][1000 genomes] |
| rs4705665 | 0.80[CHB][hapmap];0.83[LWK][hapmap] |
| rs4705668 | 0.80[CHB][hapmap] |
| rs554843 | 0.86[ASN][1000 genomes] |
| rs607821 | 0.86[ASN][1000 genomes] |
| rs7704337 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024203 | chr5:113596392-113659935 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv882728 | chr5:113651694-113731423 | Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:113657200-113660000 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 2 | chr5:113657400-113660000 | Weak transcription | HUVEC | blood vessel |
