Variant report

Variant	rs11743003
Chromosome Location	chr5:113647445-113647446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11241274	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11958855	0.97[ASN][1000 genomes]
rs12520028	0.82[ASN][1000 genomes]
rs13178721	0.93[ASN][1000 genomes]
rs13190573	0.85[ASN][1000 genomes]
rs1993516	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36961	0.82[ASN][1000 genomes]
rs36962	0.82[ASN][1000 genomes]
rs36963	0.82[ASN][1000 genomes]
rs41236	0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs4705660	0.86[ASN][1000 genomes]
rs554843	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs607821	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7734407	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024203	chr5:113596392-113659935	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021335	chr5:113599444-113659146	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv537866	chr5:113599444-113659146	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113643200-113647800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:113644400-113647600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:113646400-113648800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:113647000-113648600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:113647000-113648800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr5:113647000-113649400	Enhancers	Fetal Brain Male	brain
7	chr5:113647000-113650600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:113647200-113648600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr5:113647200-113648800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr5:113647200-113649400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr5:113647400-113647600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr5:113647400-113647800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:113647400-113647800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr5:113647400-113648000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:113647400-113648600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links