Variant report

Variant	rs1993516
Chromosome Location	chr5:113636122-113636123
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11241274	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11743003	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11958855	0.98[ASN][1000 genomes]
rs12522842	0.80[EUR][1000 genomes]
rs13155731	0.83[CHB][hapmap]
rs13173796	0.83[CHB][hapmap]
rs13178721	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs13186627	0.90[CHB][hapmap]
rs13187753	0.91[CHB][hapmap]
rs13190573	0.90[ASN][1000 genomes]
rs1457761	0.83[CHB][hapmap]
rs41236	0.83[ASN][1000 genomes]
rs4705504	0.80[CHB][hapmap]
rs4705660	0.88[ASN][1000 genomes]
rs4705665	0.80[CHB][hapmap]
rs4705668	0.83[CHB][hapmap]
rs554843	0.86[ASN][1000 genomes]
rs607821	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7734407	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024203	chr5:113596392-113659935	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021335	chr5:113599444-113659146	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv537866	chr5:113599444-113659146	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113634200-113640800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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