Variant report

Variant	rs1457761
Chromosome Location	chr5:113729479-113729480
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1072922	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs12188044	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs12189479	0.86[ASN][1000 genomes]
rs13155731	0.88[JPT][hapmap]
rs13163662	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs13173796	0.88[JPT][hapmap]
rs13174521	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs13176052	0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs13179135	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs13181189	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs13183393	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs13184658	0.92[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs13186627	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs13187753	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs13190428	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs1457760	0.92[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1457762	0.90[CEU][hapmap];0.90[CHB][hapmap];0.88[JPT][hapmap]
rs1496389	0.86[ASN][1000 genomes]
rs1496390	0.90[CHB][hapmap];0.86[ASN][1000 genomes]
rs163210	0.91[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs163304	0.84[ASN][1000 genomes]
rs181949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2125146	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs337685	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs337689	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs337691	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs337695	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs337699	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[EUR][1000 genomes]
rs337707	0.81[CEU][hapmap]
rs337708	0.88[JPT][hapmap]
rs337709	0.80[CEU][hapmap]
rs337711	0.92[CHB][hapmap];0.88[JPT][hapmap];0.81[ASN][1000 genomes]
rs36938	0.92[CHB][hapmap]
rs36942	1.00[CHB][hapmap]
rs36945	1.00[CHB][hapmap]
rs36946	0.91[CHB][hapmap]
rs36949	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs36950	1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs3857431	0.88[JPT][hapmap]
rs388084	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[EUR][1000 genomes]
rs4705504	0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs4705665	0.88[JPT][hapmap]
rs4705668	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113713200-113730800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:113725200-113730200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:113725200-113730800	Enhancers	Liver	Liver
4	chr5:113727000-113730800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:113728200-113732400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:113728400-113731400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr5:113728800-113729800	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:113728800-113731000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:113728800-113731400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:113728800-113731400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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