Variant report

Variant	rs12189479
Chromosome Location	chr5:113731078-113731079
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1072922	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs12187015	0.88[EUR][1000 genomes]
rs12188044	0.86[ASN][1000 genomes]
rs12189161	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12189350	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12518600	0.88[EUR][1000 genomes]
rs12518601	0.87[EUR][1000 genomes]
rs12519857	0.89[ASN][1000 genomes]
rs12520509	0.89[ASN][1000 genomes]
rs12523150	0.81[ASN][1000 genomes]
rs13155731	0.81[ASN][1000 genomes]
rs13156919	0.83[ASN][1000 genomes]
rs13157115	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13157173	0.83[ASN][1000 genomes]
rs13163662	0.89[ASN][1000 genomes]
rs13168891	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13173571	0.88[EUR][1000 genomes]
rs13173796	0.81[ASN][1000 genomes]
rs13174521	0.89[ASN][1000 genomes]
rs13176052	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178324	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13179135	0.86[ASN][1000 genomes]
rs13181189	0.89[ASN][1000 genomes]
rs13182217	0.89[ASN][1000 genomes]
rs13182224	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13182997	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13183081	0.89[ASN][1000 genomes]
rs13183393	0.86[ASN][1000 genomes]
rs13183492	0.90[EUR][1000 genomes]
rs13184658	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13186627	0.83[ASN][1000 genomes]
rs13187753	0.83[ASN][1000 genomes]
rs13189863	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13190297	0.92[ASN][1000 genomes]
rs13190428	0.86[ASN][1000 genomes]
rs1457760	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457761	0.86[ASN][1000 genomes]
rs1457762	0.89[ASN][1000 genomes]
rs1496389	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496390	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2125146	0.86[ASN][1000 genomes]
rs337685	0.90[ASN][1000 genomes]
rs337691	0.90[ASN][1000 genomes]
rs337695	0.90[ASN][1000 genomes]
rs3857431	0.86[ASN][1000 genomes]
rs4705500	0.88[EUR][1000 genomes]
rs4705502	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4705503	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4705504	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705661	0.88[EUR][1000 genomes]
rs4705662	0.88[EUR][1000 genomes]
rs4705665	0.81[ASN][1000 genomes]
rs4705668	0.81[ASN][1000 genomes]
rs716845	0.80[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs993910	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113728200-113732400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:113728400-113731400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:113728800-113731400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:113728800-113731400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:113730200-113731800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr5:113730400-113731400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:113730800-113731200	Flanking Active TSS	Liver	Liver
8	chr5:113730800-113731600	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr5:113730800-113731600	Enhancers	Pancreas	Pancrea
10	chr5:113731000-113731400	Weak transcription	Brain Anterior Caudate	brain
11	chr5:113731000-113732000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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