Variant report

Variant	rs1496389
Chromosome Location	chr5:113725671-113725672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1013168	0.88[JPT][hapmap]
rs1072922	0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12187015	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12188044	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12189161	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12189350	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12189479	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12518600	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12518601	0.90[EUR][1000 genomes]
rs12519857	0.89[ASN][1000 genomes]
rs12520509	0.89[ASN][1000 genomes]
rs12523150	0.81[ASN][1000 genomes]
rs13155731	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13156919	0.83[ASN][1000 genomes]
rs13157115	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13157173	0.83[ASN][1000 genomes]
rs13163662	0.91[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13168891	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13173571	0.90[EUR][1000 genomes]
rs13173796	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs13174521	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13176052	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13178324	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13179135	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13181189	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13182217	0.89[ASN][1000 genomes]
rs13182224	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13182997	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13183081	0.89[ASN][1000 genomes]
rs13183393	0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13183492	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13184658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13186627	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13187753	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13189863	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13190297	0.92[ASN][1000 genomes]
rs13190428	0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1457760	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457761	0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs1457762	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[ASN][1000 genomes]
rs1496390	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.85[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs163210	1.00[JPT][hapmap]
rs168090	0.88[JPT][hapmap]
rs181949	0.91[CHB][hapmap];0.88[JPT][hapmap]
rs2125146	0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.86[ASN][1000 genomes]
rs337683	0.88[JPT][hapmap]
rs337685	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs337689	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs337691	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs337695	0.90[ASN][1000 genomes]
rs337699	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs337705	0.85[JPT][hapmap]
rs337707	0.86[JPT][hapmap]
rs337708	0.88[JPT][hapmap]
rs337709	0.88[JPT][hapmap]
rs337711	1.00[JPT][hapmap]
rs337714	0.88[JPT][hapmap]
rs338625	0.88[JPT][hapmap]
rs36938	0.83[CHB][hapmap]
rs36942	0.91[CHB][hapmap]
rs36945	0.91[CHB][hapmap]
rs36946	0.83[CHB][hapmap]
rs36949	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs36950	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs3857431	1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs388084	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs4705500	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4705502	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4705503	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4705504	1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4705661	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4705662	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4705665	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4705667	0.88[JPT][hapmap]
rs4705668	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6859284	0.88[JPT][hapmap]
rs716845	0.86[ASN][1000 genomes]
rs993910	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113713200-113730800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:113715000-113727800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:113723800-113727400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr5:113723800-113728000	Weak transcription	Brain Hippocampus Middle	brain
5	chr5:113724400-113726400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:113725000-113726200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:113725000-113726400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr5:113725000-113726400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr5:113725000-113727800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:113725000-113728200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:113725200-113726400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr5:113725200-113726800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:113725200-113727400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:113725200-113730200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr5:113725200-113730800	Enhancers	Liver	Liver
16	chr5:113725400-113725800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:113725400-113725800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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