Variant report

Variant	rs3857431
Chromosome Location	chr5:113738714-113738715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1013168	1.00[CEU][hapmap];0.90[GIH][hapmap];0.88[JPT][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1072922	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188044	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189479	0.86[ASN][1000 genomes]
rs12519857	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12520509	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12523150	0.95[ASN][1000 genomes]
rs13155731	0.80[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13156919	0.93[ASN][1000 genomes]
rs13157115	0.81[ASN][1000 genomes]
rs13157173	0.93[ASN][1000 genomes]
rs13160034	0.86[ASN][1000 genomes]
rs13163662	0.86[ASW][hapmap];0.95[CEU][hapmap];0.82[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13168891	0.81[ASN][1000 genomes]
rs13173796	0.80[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13174521	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13176052	1.00[JPT][hapmap];0.88[YRI][hapmap];0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs13178324	0.81[ASN][1000 genomes]
rs13179135	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13181189	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13182217	0.81[ASN][1000 genomes]
rs13182224	0.81[ASN][1000 genomes]
rs13183081	0.81[ASN][1000 genomes]
rs13183393	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13184658	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs13186627	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13187461	0.86[ASN][1000 genomes]
rs13187753	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13190297	0.84[ASN][1000 genomes]
rs13190428	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1457760	1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1457761	0.88[JPT][hapmap]
rs1457762	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1496389	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1496390	0.86[JPT][hapmap];0.90[LWK][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs163210	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs168090	0.88[JPT][hapmap]
rs181949	0.88[JPT][hapmap]
rs2125146	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs337683	0.88[JPT][hapmap]
rs337685	1.00[JPT][hapmap]
rs337689	0.88[JPT][hapmap]
rs337691	1.00[JPT][hapmap]
rs337699	0.88[JPT][hapmap]
rs337705	0.85[JPT][hapmap]
rs337707	0.86[JPT][hapmap]
rs337708	0.88[JPT][hapmap]
rs337709	0.88[JPT][hapmap]
rs337711	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs337714	0.88[JPT][hapmap]
rs338625	0.88[JPT][hapmap]
rs36949	1.00[JPT][hapmap]
rs36950	1.00[JPT][hapmap]
rs388084	0.88[JPT][hapmap]
rs4705504	0.80[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4705665	0.80[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4705667	0.95[CEU][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4705668	0.80[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6859284	0.88[JPT][hapmap]
rs716845	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs993910	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113731800-113739800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:113731800-113743400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:113732000-113742600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:113733000-113740200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:113736000-113742800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:113738000-113739800	Enhancers	Liver	Liver

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