Variant report

Variant	rs993910
Chromosome Location	chr5:113710358-113710359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1072922	0.81[ASN][1000 genomes]
rs12187015	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12188044	0.81[ASN][1000 genomes]
rs12189161	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12189350	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12189479	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12518600	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12518601	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12519857	0.84[ASN][1000 genomes]
rs12520509	0.84[ASN][1000 genomes]
rs13157115	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160034	0.84[ASN][1000 genomes]
rs13163662	0.84[ASN][1000 genomes]
rs13168891	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13173571	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13174521	0.84[ASN][1000 genomes]
rs13176052	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13178324	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179135	0.81[ASN][1000 genomes]
rs13181189	0.84[ASN][1000 genomes]
rs13182217	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13182224	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13182997	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13183081	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13183393	0.81[ASN][1000 genomes]
rs13183492	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13184658	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13187461	0.84[ASN][1000 genomes]
rs13189863	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13190297	0.81[ASN][1000 genomes]
rs13190428	0.81[ASN][1000 genomes]
rs1457760	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1457762	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1496389	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1496390	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs163304	0.90[ASN][1000 genomes]
rs181949	0.90[ASN][1000 genomes]
rs2125146	0.81[ASN][1000 genomes]
rs36949	0.90[ASN][1000 genomes]
rs36950	0.90[ASN][1000 genomes]
rs3857431	0.81[ASN][1000 genomes]
rs4705500	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4705502	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4705503	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4705504	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4705661	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4705662	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs716845	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113699800-113712600	Weak transcription	Pancreas	Pancrea
2	chr5:113699800-113714800	Weak transcription	Left Ventricle	heart
3	chr5:113700600-113714200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:113702800-113716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:113704000-113714200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:113704400-113711800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:113705400-113714200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr5:113705600-113711800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:113707400-113711800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:113707400-113713000	Weak transcription	Brain Anterior Caudate	brain
11	chr5:113709600-113710400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr5:113710200-113713000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr5:113710200-113713000	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links