Variant report

Variant	rs163304
Chromosome Location	chr5:113707299-113707300
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs13157115	0.90[ASN][1000 genomes]
rs13168891	0.90[ASN][1000 genomes]
rs13178324	0.90[ASN][1000 genomes]
rs13182217	0.90[ASN][1000 genomes]
rs13182224	0.90[ASN][1000 genomes]
rs13182997	0.88[ASN][1000 genomes]
rs13183081	0.90[ASN][1000 genomes]
rs1457761	0.84[ASN][1000 genomes]
rs1457762	0.90[ASN][1000 genomes]
rs163210	0.83[ASN][1000 genomes]
rs163301	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs163302	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs163303	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs168110	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs181949	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs337685	0.90[ASN][1000 genomes]
rs337691	0.90[ASN][1000 genomes]
rs337695	0.90[ASN][1000 genomes]
rs337699	0.82[ASN][1000 genomes]
rs337711	0.83[ASN][1000 genomes]
rs36938	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36942	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36945	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs36946	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36947	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36949	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36950	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36955	0.83[AMR][1000 genomes]
rs36957	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs40179	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4705502	0.88[ASN][1000 genomes]
rs4705503	0.88[ASN][1000 genomes]
rs636200	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs993910	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113699800-113712600	Weak transcription	Pancreas	Pancrea
2	chr5:113699800-113714800	Weak transcription	Left Ventricle	heart
3	chr5:113700200-113709800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr5:113700600-113714200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:113701200-113707400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:113701400-113710200	Weak transcription	Liver	Liver
7	chr5:113702200-113708000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr5:113702800-113716000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr5:113703800-113707400	Enhancers	Dnd41	blood
10	chr5:113704000-113714200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:113704400-113711800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:113705400-113714200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr5:113705600-113709600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr5:113705600-113711800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:113706200-113707400	Enhancers	Brain Anterior Caudate	brain
16	chr5:113706400-113707400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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