Variant report

Variant	rs163301
Chromosome Location	chr5:113689397-113689398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1013168	0.84[JPT][hapmap]
rs1072922	0.84[JPT][hapmap]
rs12187015	0.90[ASN][1000 genomes]
rs12188044	0.82[JPT][hapmap]
rs12189161	0.87[ASN][1000 genomes]
rs12189350	0.90[ASN][1000 genomes]
rs12518600	0.84[ASN][1000 genomes]
rs12518601	0.84[ASN][1000 genomes]
rs13155731	0.84[JPT][hapmap]
rs13163662	0.84[JPT][hapmap]
rs13173571	0.81[ASN][1000 genomes]
rs13173796	0.84[JPT][hapmap]
rs13174521	0.84[JPT][hapmap]
rs13176052	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs13179135	0.82[JPT][hapmap]
rs13181189	0.82[JPT][hapmap]
rs13183393	0.84[JPT][hapmap]
rs13183492	0.81[ASN][1000 genomes]
rs13184658	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs13186627	0.84[JPT][hapmap]
rs13187753	0.84[JPT][hapmap]
rs13189863	0.87[ASN][1000 genomes]
rs13190428	0.84[JPT][hapmap]
rs1457760	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs1457761	1.00[CHB][hapmap]
rs1457762	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs1496390	0.82[CHB][hapmap]
rs163210	0.84[JPT][hapmap]
rs163302	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs163303	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs163304	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs168090	0.84[JPT][hapmap]
rs168110	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs181949	0.85[CEU][hapmap];0.91[CHB][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2125146	0.84[JPT][hapmap]
rs337683	0.84[JPT][hapmap]
rs337685	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs337689	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs337691	0.91[CHB][hapmap];0.84[JPT][hapmap]
rs337699	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs337707	0.82[JPT][hapmap]
rs337708	0.84[JPT][hapmap]
rs337709	0.84[JPT][hapmap]
rs337711	0.84[JPT][hapmap]
rs337714	0.84[JPT][hapmap]
rs338625	0.84[JPT][hapmap]
rs36938	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36942	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36945	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs36946	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36947	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36949	0.85[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs36950	0.85[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs36955	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs36957	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3857431	0.84[JPT][hapmap]
rs388084	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs40179	0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4705500	0.84[ASN][1000 genomes]
rs4705504	0.84[JPT][hapmap]
rs4705661	0.84[ASN][1000 genomes]
rs4705662	0.84[ASN][1000 genomes]
rs4705665	0.84[JPT][hapmap]
rs4705667	0.84[JPT][hapmap]
rs4705668	0.84[JPT][hapmap]
rs636200	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859284	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113683400-113690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:113687800-113690400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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