Variant report

Variant	rs36942
Chromosome Location	chr5:113695142-113695143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12187015	0.89[ASN][1000 genomes]
rs12189161	0.86[ASN][1000 genomes]
rs12189350	0.89[ASN][1000 genomes]
rs12518600	0.83[ASN][1000 genomes]
rs12518601	0.83[ASN][1000 genomes]
rs13163662	0.83[CHB][hapmap]
rs13174521	0.83[CHB][hapmap]
rs13176052	0.91[CHB][hapmap]
rs13181189	0.83[CHB][hapmap]
rs13184658	0.91[CHB][hapmap]
rs13189863	0.86[ASN][1000 genomes]
rs1457760	0.91[CHB][hapmap]
rs1457761	1.00[CHB][hapmap]
rs1457762	0.91[CHB][hapmap]
rs1496390	0.91[CHB][hapmap]
rs163210	0.83[CHB][hapmap]
rs163301	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs163302	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs163303	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs163304	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs168110	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs181949	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs337685	1.00[CHB][hapmap]
rs337689	0.92[CHB][hapmap]
rs337691	1.00[CHB][hapmap]
rs337699	0.92[CHB][hapmap]
rs337711	0.83[CHB][hapmap]
rs36938	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36945	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36946	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36947	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs36949	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs36950	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs36955	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs36957	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs388084	0.92[CHB][hapmap]
rs40179	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4705500	0.83[ASN][1000 genomes]
rs4705504	0.82[CHB][hapmap]
rs4705661	0.83[ASN][1000 genomes]
rs4705662	0.83[ASN][1000 genomes]
rs636200	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113692000-113695200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:113692000-113695600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:113692000-113695800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:113694400-113695200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:113695000-113695200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr5:113695000-113695200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
7	chr5:113695000-113695200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr5:113695000-113695200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr5:113695000-113695400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr5:113695000-113695600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr5:113695000-113695600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:113695000-113695600	Weak transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links