Variant report

Variant	rs12187015
Chromosome Location	chr5:113688021-113688022
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12189161	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12189350	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189479	0.88[EUR][1000 genomes]
rs12517304	0.85[ASN][1000 genomes]
rs12518600	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12518601	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12520028	0.82[ASN][1000 genomes]
rs13157115	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13163662	0.83[CHB][hapmap]
rs13168891	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13170487	0.81[ASN][1000 genomes]
rs13173571	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13174521	0.84[CHB][hapmap]
rs13176052	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13178324	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13181189	0.84[CHB][hapmap]
rs13182217	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13182224	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13182997	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13183081	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13183492	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13184658	1.00[CEU][hapmap];0.92[CHB][hapmap];0.89[EUR][1000 genomes]
rs13189863	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1457760	1.00[CEU][hapmap];0.92[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1457761	0.92[CHB][hapmap]
rs1457762	0.84[CEU][hapmap];0.91[CHB][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1496389	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1496390	1.00[CEU][hapmap];0.91[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs163301	0.90[ASN][1000 genomes]
rs163302	0.90[ASN][1000 genomes]
rs163303	0.90[ASN][1000 genomes]
rs168110	0.90[ASN][1000 genomes]
rs181949	0.83[CHB][hapmap]
rs337685	0.82[CHB][hapmap]
rs337691	0.83[CHB][hapmap]
rs36938	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs36942	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs36945	0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs36946	0.85[JPT][hapmap]
rs36949	0.83[CHB][hapmap]
rs36950	0.83[CHB][hapmap]
rs36955	0.82[ASN][1000 genomes]
rs40179	0.89[ASN][1000 genomes]
rs4705500	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705502	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4705503	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4705504	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[EUR][1000 genomes]
rs4705661	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4705662	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs636200	0.90[ASN][1000 genomes]
rs7704337	0.86[ASN][1000 genomes]
rs993910	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882728	chr5:113651694-113731423	Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830451	chr5:113684301-113829833	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113683400-113690600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:113687800-113690400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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