Variant report
| Variant | rs7704337 |
|---|---|
| Chromosome Location | chr5:113670134-113670135 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1021577 | 0.91[ASN][1000 genomes] |
| rs12187015 | 0.86[ASN][1000 genomes] |
| rs12189161 | 0.83[ASN][1000 genomes] |
| rs12189350 | 0.86[ASN][1000 genomes] |
| rs12517304 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12518600 | 0.90[ASN][1000 genomes] |
| rs12518601 | 0.90[ASN][1000 genomes] |
| rs12520028 | 0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13155731 | 0.80[CHB][hapmap] |
| rs13170487 | 0.87[ASN][1000 genomes] |
| rs13173571 | 0.87[ASN][1000 genomes] |
| rs13173796 | 0.80[CHB][hapmap] |
| rs13176052 | 0.89[ASW][hapmap];0.85[GIH][hapmap] |
| rs13183492 | 0.87[ASN][1000 genomes] |
| rs13186627 | 0.88[CHB][hapmap] |
| rs13187753 | 0.90[CHB][hapmap] |
| rs13189863 | 0.83[ASN][1000 genomes] |
| rs13190297 | 0.90[EUR][1000 genomes] |
| rs1457761 | 0.81[CHB][hapmap] |
| rs1496390 | 0.80[ASW][hapmap];0.85[GIH][hapmap] |
| rs36942 | 0.85[JPT][hapmap] |
| rs36945 | 0.85[JPT][hapmap] |
| rs41236 | 0.87[ASN][1000 genomes] |
| rs4705500 | 0.90[ASN][1000 genomes] |
| rs4705504 | 0.80[CHB][hapmap];0.86[GIH][hapmap] |
| rs4705661 | 0.90[ASN][1000 genomes] |
| rs4705662 | 0.90[ASN][1000 genomes] |
| rs4705665 | 0.80[CHB][hapmap];0.80[LWK][hapmap] |
| rs4705668 | 0.80[CHB][hapmap] |
| rs554843 | 0.84[ASN][1000 genomes] |
| rs607821 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882728 | chr5:113651694-113731423 | Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7704337 | TMEM232 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:113669000-113670600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
| 2 | chr5:113670000-113672000 | Enhancers | NHDF-Ad | bronchial |
